Analysis of interatomic Contacts of Structural Units in PDB entry:
1GIR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GIR entry

There is 1 chain in PDB entry 1GIR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3ASN 413
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1GIR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 29Right-handed alpha
Helix 2
2
A
32 45Right-handed alpha
Helix 3
3
A
45 56Right-handed alpha
Helix 4
4
A
57 59Right-handed 310
Helix 5
5
A
60 67Right-handed alpha
Helix 6
6
A
67 83Right-handed alpha
Helix 7
7
A
96 101Right-handed 310
Helix 8
8
A
115 126Right-handed alpha
Helix 9
9
A
216 229Right-handed alpha
Helix 10
10
A
230 235Right-handed alpha
Helix 11
11
A
236 249Right-handed alpha
Helix 12
12
A
250 260Right-handed alpha
Helix 13
13
A
261 266Right-handed alpha
Helix 14
14
A
268 282Right-handed alpha
Helix 15
15
A
298 303Right-handed 310
Helix 16
16
A
308 312Right-handed 310
Helix 17
17
A
315 327Right-handed alpha
Helix 18
18
A
370 372Right-handed 310
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There are 4 sheets in PDB entry 1GIR. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 94first strand
Strand 2
A
154 160anti-parallel
Strand 3
A
198 208parallel
Strand 4
A
175 195anti-parallel
Strand 5
A
130 139anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 94first strand
Strand 2
A
154 160anti-parallel
Strand 3
A
198 208parallel
Strand 4
A
175 195anti-parallel
Strand 5
A
167 170anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 297first strand
Strand 2
A
354 360anti-parallel
Strand 3
A
402 411parallel
Strand 4
A
388 399anti-parallel
Strand 5
A
330 332anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 340first strand
Strand 2
A
380 383anti-parallel
Strand 3
A
367 368anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il