Analysis of interatomic Contacts of Structural Units in PDB entry:
1GJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GJ9 entry

There are 2 chains in PDB entry 1GJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 9LEU 18
B
 ILE 16LYS 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1GJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
23 27Right-handed 310
Helix 2
2
B
55 59Right-handed 310
Helix 3
3
B
61 62Right-handed 310
Helix 4
4
B
164 169Right-handed alpha
Helix 5
5
B
172 176Right-handed 310
Helix 6
6
B
234 242Right-handed alpha
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There are 2 sheets in PDB entry 1GJ9. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 36first strand
Strand 2
B
38 48anti-parallel
Strand 3
B
51 54anti-parallel
Strand 4
B
104 109anti-parallel
Strand 5
B
81 89anti-parallel
Strand 6
B
64 68anti-parallel
Strand 7
B
30 36anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
99 100anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il