Analysis of interatomic Contacts of Structural Units in PDB entry:
1GJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GJI entry

There are 4 chains in PDB entry 1GJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 DG 1 DA 20
D
 DT 301 DC 320
A
 PRO 7ASP 281
B
 PRO 7ASP 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1GJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 28Right-handed 310
Helix 2
2
A
113 123Right-handed alpha
Helix 3
3
A
132 138Right-handed 310
Helix 4
4
A
211 215Right-handed 310
Helix 5
5
A
231 233Right-handed 310
Helix 6
6
A
264 268Right-handed 310
Helix 7
7
B
24 28Right-handed 310
Helix 8
8
B
113 123Right-handed alpha
Helix 9
9
B
211 215Right-handed 310
Helix 10
10
B
231 233Right-handed 310
Helix 11
11
B
264 268Right-handed 310
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There are 10 sheets in PDB entry 1GJI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
48 52anti-parallel
Strand 3
A
99 100anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
105 108parallel
Strand 3
A
77 79anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 84first strand
Strand 2
A
87 92anti-parallel
Strand 3
A
58 65anti-parallel
Strand 4
A
146 156anti-parallel
Strand 5
A
169 170anti-parallel
Strand 6
A
146 156anti-parallel
Strand 7
A
174 175anti-parallel
Strand 8
A
146 156anti-parallel
Strand 9
A
162 165anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 190first strand
Strand 2
A
202 207anti-parallel
Strand 3
A
240 244anti-parallel
Strand 4
A
235 236anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
274 279parallel
Strand 3
A
256 263anti-parallel
Strand 4
A
216 221anti-parallel
Strand 5
A
224 227anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 13first strand
Strand 2
B
48 52anti-parallel
Strand 3
B
98 100anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 165first strand
Strand 2
B
146 156anti-parallel
Strand 3
B
169 175anti-parallel
Strand 4
B
146 156anti-parallel
Strand 5
B
58 65anti-parallel
Strand 6
B
87 92anti-parallel
Strand 7
B
83 84anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
105 107anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 190first strand
Strand 2
B
202 207anti-parallel
Strand 3
B
240 244anti-parallel
Strand 4
B
235 236anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 196first strand
Strand 2
B
274 279parallel
Strand 3
B
256 263anti-parallel
Strand 4
B
216 221anti-parallel
Strand 5
B
224 227anti-parallel
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