Analysis of interatomic Contacts of Structural Units in PDB entry:
1GJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GJM entry

There is 1 chain in PDB entry 1GJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 10VAL 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1GJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 22Right-handed 310
Helix 2
2
A
33 36Right-handed 310
Helix 3
3
A
37 44Right-handed alpha
Helix 4
4
A
45 47Right-handed 310
Helix 5
5
A
57 61Right-handed 310
Helix 6
6
A
67 77Right-handed alpha
Helix 7
7
A
107 120Right-handed alpha
Helix 8
8
A
120 143Right-handed alpha
Helix 9
9
A
150 154Right-handed alpha
Helix 10
10
A
156 168Right-handed alpha
Helix 11
11
A
170 172Right-handed 310
Helix 12
12
A
173 184Right-handed alpha
Helix 13
13
A
192 214Right-handed alpha
Helix 14
14
A
218 225Right-handed alpha
Helix 15
15
A
234 267Right-handed alpha
Helix 16
16
A
267 277Right-handed alpha
Helix 17
17
A
280 292Right-handed alpha
Helix 18
18
A
324 328Right-handed 310
Helix 19
19
A
359 378Right-handed alpha
Helix 20
20
A
407 411Right-handed 310
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There are 6 sheets in PDB entry 1GJM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
62 65anti-parallel
Strand 3
A
317 320parallel
Strand 4
A
297 301anti-parallel
Strand 5
A
81 82anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 91first strand
Strand 2
A
94 95anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 149first strand
Strand 2
A
403 405anti-parallel
Strand 3
A
382 383anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
231 232anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
310 312anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
398 399anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il