Analysis of interatomic Contacts of Structural Units in PDB entry:
1GJQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1GJQ entry

There are 2 chains in PDB entry 1GJQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	TYR 543
B	LYS 5	TYR 543

There are 26 helices in PDB entry 1GJQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	5	11	Right-handed alpha
Helix 2	2	A	18	22	Right-handed 310
Helix 3	3	A	32	47	Right-handed alpha
Helix 4	4	A	47	52	Right-handed alpha
Helix 5	5	A	64	72	Right-handed alpha
Helix 6	6	A	72	83	Right-handed alpha
Helix 7	7	A	98	109	Right-handed alpha
Helix 8	8	A	120	128	Right-handed alpha
Helix 9	9	A	133	137	Right-handed 310
Helix 10	10	A	146	148	Right-handed 310
Helix 11	11	A	444	449	Right-handed alpha
Helix 12	12	A	467	473	Right-handed alpha
Helix 13	13	A	535	540	Right-handed alpha
Helix 14	14	B	5	11	Right-handed alpha
Helix 15	15	B	18	22	Right-handed 310
Helix 16	16	B	32	47	Right-handed alpha
Helix 17	17	B	47	52	Right-handed alpha
Helix 18	18	B	64	72	Right-handed alpha
Helix 19	19	B	72	83	Right-handed alpha
Helix 20	20	B	98	109	Right-handed alpha
Helix 21	21	B	120	128	Right-handed alpha
Helix 22	22	B	133	137	Right-handed 310
Helix 23	23	B	146	148	Right-handed 310
Helix 24	24	B	444	449	Right-handed alpha
Helix 25	25	B	467	473	Right-handed alpha
Helix 26	26	B	535	540	Right-handed alpha

There are 17 sheets in PDB entry 1GJQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, BA, BB, BC, BD, BE, BF, BG, BH,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	130	first strand
Strand 2	A	213	219	anti-parallel
Strand 3	A	201	206	anti-parallel
Strand 4	A	192	197	anti-parallel
Strand 5	A	181	186	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	176	first strand
Strand 2	A	160	165	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	529	534	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	229	first strand
Strand 2	A	239	246	anti-parallel
Strand 3	A	249	254	anti-parallel
Strand 4	A	260	265	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	269	first strand
Strand 2	A	276	277	anti-parallel

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There are 8 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	287	first strand
Strand 2	A	293	298	anti-parallel
Strand 3	A	303	308	anti-parallel
Strand 4	A	315	321	anti-parallel
Strand 5	B	316	321	anti-parallel
Strand 6	B	303	308	anti-parallel
Strand 7	B	293	298	anti-parallel
Strand 8	B	282	287	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	331	first strand
Strand 2	A	337	342	anti-parallel
Strand 3	A	347	352	anti-parallel
Strand 4	A	357	363	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	378	first strand
Strand 2	A	382	389	anti-parallel
Strand 3	A	394	399	anti-parallel
Strand 4	A	412	417	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	427	first strand
Strand 2	A	434	437	anti-parallel
Strand 3	A	451	455	anti-parallel
Strand 4	A	464	466	anti-parallel

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There are 4 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	486	first strand
Strand 2	A	492	498	anti-parallel
Strand 3	A	506	511	anti-parallel
Strand 4	A	517	521	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	130	first strand
Strand 2	B	213	219	anti-parallel
Strand 3	B	201	206	anti-parallel
Strand 4	B	192	197	anti-parallel
Strand 5	B	181	186	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	176	first strand
Strand 2	B	160	165	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	529	534	anti-parallel

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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	229	first strand
Strand 2	B	239	246	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	260	265	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	269	first strand
Strand 2	B	276	277	anti-parallel

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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	331	first strand
Strand 2	B	337	342	anti-parallel
Strand 3	B	347	352	anti-parallel
Strand 4	B	357	363	anti-parallel

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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	378	first strand
Strand 2	B	382	389	anti-parallel
Strand 3	B	394	399	anti-parallel
Strand 4	B	412	417	anti-parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	426	427	first strand
Strand 2	B	434	437	anti-parallel
Strand 3	B	451	455	anti-parallel
Strand 4	B	464	466	anti-parallel

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There are 4 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	480	486	first strand
Strand 2	B	492	498	anti-parallel
Strand 3	B	506	511	anti-parallel
Strand 4	B	516	521	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1GJQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
1GJQ