Analysis of interatomic Contacts of Structural Units in PDB entry:
1GJU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GJU entry

There is 1 chain in PDB entry 1GJU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 636
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1GJU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 14Right-handed alpha
Helix 2
2
A
23 27Right-handed 310
Helix 3
3
A
44 58Right-handed alpha
Helix 4
4
A
68 74Right-handed alpha
Helix 5
5
A
77 84Right-handed 310
Helix 6
6
A
90 95Right-handed alpha
Helix 7
7
A
118 125Right-handed alpha
Helix 8
8
A
125 132Right-handed alpha
Helix 9
9
A
168 171Right-handed 310
Helix 10
10
A
172 176Right-handed 310
Helix 11
11
A
179 194Right-handed alpha
Helix 12
12
A
211 215Right-handed 310
Helix 13
13
A
217 221Right-handed 310
Helix 14
14
A
227 229Right-handed 310
Helix 15
15
A
246 254Right-handed alpha
Helix 16
16
A
256 264Right-handed alpha
Helix 17
17
A
269 274Right-handed alpha
Helix 18
18
A
274 282Right-handed alpha
Helix 19
19
A
287 297Right-handed alpha
Helix 20
20
A
328 335Right-handed 310
Helix 21
21
A
344 349Right-handed alpha
Helix 22
22
A
359 367Right-handed alpha
Helix 23
23
A
368 378Right-handed alpha
Helix 24
24
A
386 390Right-handed 310
Helix 25
25
A
391 406Right-handed alpha
Helix 26
26
A
417 419Right-handed 310
Helix 27
27
A
420 428Right-handed alpha
Helix 28
28
A
435 441Right-handed alpha
Helix 29
29
A
445 447Right-handed 310
Helix 30
30
A
448 455Right-handed alpha
Helix 31
31
A
471 475Right-handed 310
Helix 32
32
A
477 491Right-handed alpha
Helix 33
33
A
502 506Right-handed 310
Helix 34
34
A
518 524Right-handed 310
Helix 35
35
A
549 566Right-handed alpha
Helix 36
36
A
566 573Right-handed alpha
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There are 6 sheets in PDB entry 1GJU. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
40 43anti-parallel
Strand 3
A
35 37anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
136 139parallel
Strand 3
A
197 202parallel
Strand 4
A
381 384parallel
Strand 5
A
410 413parallel
Strand 6
A
431 432parallel
Strand 7
A
460 462parallel
Strand 8
A
495 500parallel
Strand 9
A
86 89parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 145first strand
Strand 2
A
160 166anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
318 320anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 225first strand
Strand 2
A
298 299anti-parallel
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There are 6 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 577first strand
Strand 2
A
583 590anti-parallel
Strand 3
A
593 600anti-parallel
Strand 4
A
631 635anti-parallel
Strand 5
A
606 614anti-parallel
Strand 6
A
618 626anti-parallel
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