Analysis of interatomic Contacts of Structural Units in PDB entry:
1GK2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GK2 entry

There are 4 chains in PDB entry 1GK2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1LEU 509
B
 THR 1LEU 509
C
 THR 1LEU 509
D
 THR 1LEU 509
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 98 helices in PDB entry 1GK2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 21Right-handed alpha
Helix 2
2
A
31 48Right-handed alpha
Helix 3
3
A
59 65Right-handed 310
Helix 4
4
A
68 84Right-handed alpha
Helix 5
5
A
92 108Right-handed alpha
Helix 6
6
A
115 129Right-handed alpha
Helix 7
7
A
145 157Right-handed alpha
Helix 8
8
A
171 178Right-handed alpha
Helix 9
9
A
188 195Right-handed alpha
Helix 10
10
A
197 229Right-handed alpha
Helix 11
11
A
233 236Right-handed 310
Helix 12
12
A
237 245Right-handed alpha
Helix 13
13
A
246 261Right-handed alpha
Helix 14
14
A
264 269Right-handed alpha
Helix 15
15
A
279 284Right-handed alpha
Helix 16
16
A
284 308Right-handed alpha
Helix 17
17
A
331 361Right-handed alpha
Helix 18
18
A
361 366Right-handed alpha
Helix 19
19
A
368 372Right-handed 310
Helix 20
20
A
381 399Right-handed alpha
Helix 21
21
A
409 414Right-handed alpha
Helix 22
22
A
419 451Right-handed alpha
Helix 23
23
A
458 470Right-handed alpha
Helix 24
24
A
481 494Right-handed alpha
Helix 25
25
A
497 501Right-handed 310
Helix 26
26
B
11 21Right-handed alpha
Helix 27
27
B
31 48Right-handed alpha
Helix 28
28
B
59 65Right-handed 310
Helix 29
29
B
68 84Right-handed alpha
Helix 30
30
B
92 108Right-handed alpha
Helix 31
31
B
115 129Right-handed alpha
Helix 32
32
B
145 157Right-handed alpha
Helix 33
33
B
171 178Right-handed alpha
Helix 34
34
B
188 195Right-handed alpha
Helix 35
35
B
197 229Right-handed alpha
Helix 36
36
B
233 236Right-handed 310
Helix 37
37
B
237 245Right-handed alpha
Helix 38
38
B
246 261Right-handed alpha
Helix 39
39
B
264 269Right-handed alpha
Helix 40
40
B
279 284Right-handed alpha
Helix 41
41
B
284 308Right-handed alpha
Helix 42
42
B
331 361Right-handed alpha
Helix 43
43
B
361 366Right-handed alpha
Helix 44
44
B
368 372Right-handed 310
Helix 45
45
B
381 399Right-handed alpha
Helix 46
46
B
419 451Right-handed alpha
Helix 47
47
B
458 470Right-handed alpha
Helix 48
48
B
481 494Right-handed alpha
Helix 49
49
B
497 501Right-handed 310
Helix 50
50
C
11 21Right-handed alpha
Helix 51
51
C
31 48Right-handed alpha
Helix 52
52
C
59 63Right-handed 310
Helix 53
53
C
68 84Right-handed alpha
Helix 54
54
C
92 108Right-handed alpha
Helix 55
55
C
115 129Right-handed alpha
Helix 56
56
C
145 157Right-handed alpha
Helix 57
57
C
171 178Right-handed alpha
Helix 58
58
C
188 195Right-handed alpha
Helix 59
59
C
197 229Right-handed alpha
Helix 60
60
C
233 236Right-handed 310
Helix 61
61
C
237 245Right-handed alpha
Helix 62
62
C
246 261Right-handed alpha
Helix 63
63
C
264 269Right-handed alpha
Helix 64
64
C
279 284Right-handed alpha
Helix 65
65
C
284 308Right-handed alpha
Helix 66
66
C
331 361Right-handed alpha
Helix 67
67
C
361 366Right-handed alpha
Helix 68
68
C
368 372Right-handed 310
Helix 69
69
C
381 399Right-handed alpha
Helix 70
70
C
419 451Right-handed alpha
Helix 71
71
C
458 470Right-handed alpha
Helix 72
72
C
481 494Right-handed alpha
Helix 73
73
C
497 501Right-handed 310
Helix 74
74
D
11 21Right-handed alpha
Helix 75
75
D
31 48Right-handed alpha
Helix 76
76
D
59 65Right-handed 310
Helix 77
77
D
68 84Right-handed alpha
Helix 78
78
D
92 108Right-handed alpha
Helix 79
79
D
115 129Right-handed alpha
Helix 80
80
D
145 157Right-handed alpha
Helix 81
81
D
171 178Right-handed alpha
Helix 82
82
D
188 195Right-handed alpha
Helix 83
83
D
197 229Right-handed alpha
Helix 84
84
D
233 236Right-handed 310
Helix 85
85
D
237 245Right-handed alpha
Helix 86
86
D
246 261Right-handed alpha
Helix 87
87
D
264 269Right-handed alpha
Helix 88
88
D
279 284Right-handed alpha
Helix 89
89
D
284 308Right-handed alpha
Helix 90
90
D
331 361Right-handed alpha
Helix 91
91
D
361 366Right-handed alpha
Helix 92
92
D
368 372Right-handed 310
Helix 93
93
D
381 399Right-handed alpha
Helix 94
94
D
410 413Right-handed 310
Helix 95
95
D
419 451Right-handed alpha
Helix 96
96
D
458 470Right-handed alpha
Helix 97
97
D
481 494Right-handed alpha
Helix 98
98
D
497 501Right-handed 310
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There are 16 sheets in PDB entry 1GK2. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
24 27parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
135 137anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
161 164anti-parallel
Strand 3
A
167 170anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 317first strand
Strand 2
A
322 324anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
24 27parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
135 137anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
161 164anti-parallel
Strand 3
B
167 170anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 316first strand
Strand 2
B
323 324anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 5first strand
Strand 2
C
24 27parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
87 90first strand
Strand 2
C
135 137anti-parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 132first strand
Strand 2
C
161 164anti-parallel
Strand 3
C
167 170anti-parallel
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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
315 317first strand
Strand 2
C
322 324anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 5first strand
Strand 2
D
24 27parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
87 90first strand
Strand 2
D
135 137anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
130 132first strand
Strand 2
D
161 164anti-parallel
Strand 3
D
167 170anti-parallel
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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
315 317first strand
Strand 2
D
322 324anti-parallel
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