Analysis of interatomic Contacts of Structural Units in PDB entry:
1GKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GKM entry

There are 2 chains in PDB entry 1GKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 1GLY 141
B
 ASP 143LEU 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 1GKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
11 21Right-handed alpha
Helix 2
2
B
31 48Right-handed alpha
Helix 3
3
B
59 63Right-handed 310
Helix 4
4
B
68 84Right-handed alpha
Helix 5
5
B
92 108Right-handed alpha
Helix 6
6
B
115 129Right-handed alpha
Helix 7
7
B
143 153Right-handed alpha
Helix 8
8
B
154 156Right-handed 310
Helix 9
9
B
169 176Right-handed alpha
Helix 10
10
B
186 193Right-handed alpha
Helix 11
11
B
195 227Right-handed alpha
Helix 12
12
B
231 234Right-handed 310
Helix 13
13
B
235 243Right-handed alpha
Helix 14
14
B
244 259Right-handed alpha
Helix 15
15
B
262 268Right-handed alpha
Helix 16
16
B
270 274Right-handed 310
Helix 17
17
B
277 282Right-handed alpha
Helix 18
18
B
282 306Right-handed alpha
Helix 19
19
B
329 359Right-handed alpha
Helix 20
20
B
359 364Right-handed alpha
Helix 21
21
B
366 370Right-handed 310
Helix 22
22
B
379 397Right-handed alpha
Helix 23
23
B
417 449Right-handed alpha
Helix 24
24
B
456 468Right-handed alpha
Helix 25
25
B
479 492Right-handed alpha
Helix 26
26
B
495 499Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 1GKM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 5first strand
Strand 2
B
24 27parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
135 137anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
159 162anti-parallel
Strand 3
B
165 168anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 315first strand
Strand 2
B
320 322anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il