Analysis of interatomic Contacts of Structural Units in PDB entry:
1GKN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GKN entry

There is 1 chain in PDB entry 1GKN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 897PRO 1024
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 1GKN

There are 5 sheets in PDB entry 1GKN. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
901 902first strand
Strand 2
A
922 923anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
911 913first strand
Strand 2
A
927 932anti-parallel
Strand 3
A
941 944anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
936 937first strand
Strand 2
A
959 960anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
972 976first strand
Strand 2
A
985 990anti-parallel
Strand 3
A
1001 1006anti-parallel
Strand 4
A
1011 1013anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
994 995first strand
Strand 2
A
1021 1022anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il