Analysis of interatomic Contacts of Structural Units in PDB entry:
1GKX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GKX entry

There is 1 chain in PDB entry 1GKX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 38GLU 378
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1GKX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 81Right-handed alpha
Helix 2
2
A
83 88Right-handed alpha
Helix 3
3
A
89 109Right-handed alpha
Helix 4
4
A
114 132Right-handed alpha
Helix 5
5
A
134 146Right-handed alpha
Helix 6
6
A
153 180Right-handed alpha
Helix 7
7
A
196 217Right-handed alpha
Helix 8
8
A
236 257Right-handed alpha
Helix 9
9
A
291 295Right-handed 310
Helix 10
10
A
296 300Right-handed 310
Helix 11
11
A
338 350Right-handed alpha
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There are 3 sheets in PDB entry 1GKX. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
45 46anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
191 195anti-parallel
Strand 3
A
232 234anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 226first strand
Strand 2
A
268 274parallel
Strand 3
A
278 285anti-parallel
Strand 4
A
363 371anti-parallel
Strand 5
A
353 359anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il