Analysis of interatomic Contacts of Structural Units in PDB entry:
1GL3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GL3 entry

There are 2 chains in PDB entry 1GL3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 367
B
 MET 1ALA 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 34 helices in PDB entry 1GL3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 24Right-handed alpha
Helix 2
2
A
25 28Right-handed 310
Helix 3
3
A
59 65Right-handed alpha
Helix 4
4
A
74 88Right-handed alpha
Helix 5
5
A
111 116Right-handed alpha
Helix 6
6
A
115 124Right-handed alpha
Helix 7
7
A
134 144Right-handed alpha
Helix 8
8
A
144 149Right-handed alpha
Helix 9
9
A
163 167Right-handed 310
Helix 10
10
A
168 185Right-handed alpha
Helix 11
11
A
186 192Right-handed alpha
Helix 12
12
A
196 210Right-handed alpha
Helix 13
13
A
239 254Right-handed alpha
Helix 14
14
A
287 297Right-handed alpha
Helix 15
15
A
308 316Right-handed alpha
Helix 16
16
A
317 322Right-handed alpha
Helix 17
17
A
355 367Right-handed alpha
Helix 18
18
B
11 24Right-handed alpha
Helix 19
19
B
25 28Right-handed 310
Helix 20
20
B
59 64Right-handed alpha
Helix 21
21
B
74 88Right-handed alpha
Helix 22
22
B
111 116Right-handed alpha
Helix 23
23
B
115 125Right-handed alpha
Helix 24
24
B
134 144Right-handed alpha
Helix 25
25
B
144 149Right-handed alpha
Helix 26
26
B
163 167Right-handed 310
Helix 27
27
B
168 185Right-handed alpha
Helix 28
28
B
186 192Right-handed alpha
Helix 29
29
B
196 210Right-handed alpha
Helix 30
30
B
239 254Right-handed alpha
Helix 31
31
B
287 299Right-handed alpha
Helix 32
32
B
308 316Right-handed alpha
Helix 33
33
B
317 322Right-handed alpha
Helix 34
34
B
355 367Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 1GL3. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
30 36parallel
Strand 3
A
2 7parallel
Strand 4
A
68 71parallel
Strand 5
A
93 96parallel
Strand 6
A
129 132parallel
Strand 7
A
107 110parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 267first strand
Strand 2
A
153 162parallel
Strand 3
A
273 282anti-parallel
Strand 4
A
341 349anti-parallel
Strand 5
A
327 334anti-parallel
Strand 6
A
302 304parallel
Back to list of sheets
Back to top of page

There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
30 36parallel
Strand 3
B
2 7parallel
Strand 4
B
68 71parallel
Strand 5
B
93 96parallel
Strand 6
B
129 132parallel
Strand 7
B
107 110parallel
Back to list of sheets
Back to top of page

There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 267first strand
Strand 2
B
153 162parallel
Strand 3
B
273 282anti-parallel
Strand 4
B
341 349anti-parallel
Strand 5
B
327 334anti-parallel
Strand 6
B
302 304parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il