Analysis of interatomic Contacts of Structural Units in PDB entry:
1GL7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1GL7 entry

There are 6 chains in PDB entry 1GL7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 78	GLU 504
B	VAL 74	GLU 504
D	GLY 75	GLY 505
E	GLN 76	GLU 504
F	GLY 77	THR 506
G	GLU 78	GLY 505

There are130 helices in PDB entry 1GL7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	95	104	Right-handed alpha
Helix 2	2	A	118	124	Right-handed 310
Helix 3	3	A	135	150	Right-handed alpha
Helix 4	4	A	161	168	Right-handed alpha
Helix 5	5	A	186	191	Right-handed 310
Helix 6	6	A	195	205	Right-handed alpha
Helix 7	7	A	210	234	Right-handed alpha
Helix 8	8	A	238	248	Right-handed alpha
Helix 9	9	A	250	259	Right-handed alpha
Helix 10	10	A	262	267	Right-handed alpha
Helix 11	11	A	270	293	Right-handed alpha
Helix 12	12	A	300	307	Right-handed alpha
Helix 13	13	A	308	311	Right-handed 310
Helix 14	14	A	318	320	Right-handed 310
Helix 15	15	A	321	340	Right-handed alpha
Helix 16	16	A	357	361	Right-handed 310
Helix 17	17	A	366	374	Right-handed alpha
Helix 18	18	A	387	396	Right-handed alpha
Helix 19	19	A	396	406	Right-handed alpha
Helix 20	20	A	419	431	Right-handed alpha
Helix 21	21	A	463	469	Right-handed alpha
Helix 22	22	B	95	104	Right-handed alpha
Helix 23	23	B	118	124	Right-handed 310
Helix 24	24	B	135	150	Right-handed alpha
Helix 25	25	B	161	168	Right-handed alpha
Helix 26	26	B	186	191	Right-handed 310
Helix 27	27	B	195	205	Right-handed alpha
Helix 28	28	B	210	234	Right-handed alpha
Helix 29	29	B	238	248	Right-handed alpha
Helix 30	30	B	250	259	Right-handed alpha
Helix 31	31	B	262	267	Right-handed alpha
Helix 32	32	B	270	293	Right-handed alpha
Helix 33	33	B	300	307	Right-handed alpha
Helix 34	34	B	308	311	Right-handed 310
Helix 35	35	B	318	320	Right-handed 310
Helix 36	36	B	321	340	Right-handed alpha
Helix 37	37	B	341	343	Right-handed 310
Helix 38	38	B	357	361	Right-handed 310
Helix 39	39	B	366	374	Right-handed alpha
Helix 40	40	B	387	396	Right-handed alpha
Helix 41	41	B	396	406	Right-handed alpha
Helix 42	42	B	419	431	Right-handed alpha
Helix 43	43	B	463	469	Right-handed alpha
Helix 44	44	D	95	104	Right-handed alpha
Helix 45	45	D	118	124	Right-handed 310
Helix 46	46	D	135	150	Right-handed alpha
Helix 47	47	D	161	168	Right-handed alpha
Helix 48	48	D	186	191	Right-handed 310
Helix 49	49	D	195	205	Right-handed alpha
Helix 50	50	D	210	234	Right-handed alpha
Helix 51	51	D	238	248	Right-handed alpha
Helix 52	52	D	250	259	Right-handed alpha
Helix 53	53	D	262	267	Right-handed alpha
Helix 54	54	D	270	288	Right-handed alpha
Helix 55	55	D	288	293	Right-handed alpha
Helix 56	56	D	300	307	Right-handed alpha
Helix 57	57	D	308	311	Right-handed 310
Helix 58	58	D	318	320	Right-handed 310
Helix 59	59	D	321	340	Right-handed alpha
Helix 60	60	D	357	361	Right-handed 310
Helix 61	61	D	366	374	Right-handed alpha
Helix 62	62	D	387	396	Right-handed alpha
Helix 63	63	D	396	406	Right-handed alpha
Helix 64	64	D	419	431	Right-handed alpha
Helix 65	65	D	463	469	Right-handed alpha
Helix 66	66	E	95	104	Right-handed alpha
Helix 67	67	E	118	124	Right-handed 310
Helix 68	68	E	135	150	Right-handed alpha
Helix 69	69	E	161	168	Right-handed alpha
Helix 70	70	E	186	191	Right-handed 310
Helix 71	71	E	195	205	Right-handed alpha
Helix 72	72	E	210	234	Right-handed alpha
Helix 73	73	E	238	248	Right-handed alpha
Helix 74	74	E	250	259	Right-handed alpha
Helix 75	75	E	262	267	Right-handed alpha
Helix 76	76	E	270	293	Right-handed alpha
Helix 77	77	E	300	307	Right-handed alpha
Helix 78	78	E	308	311	Right-handed 310
Helix 79	79	E	318	320	Right-handed 310
Helix 80	80	E	321	340	Right-handed alpha
Helix 81	81	E	341	343	Right-handed 310
Helix 82	82	E	357	361	Right-handed 310
Helix 83	83	E	366	374	Right-handed alpha
Helix 84	84	E	387	396	Right-handed alpha
Helix 85	85	E	396	406	Right-handed alpha
Helix 86	86	E	419	431	Right-handed alpha
Helix 87	87	E	463	469	Right-handed alpha
Helix 88	88	F	96	104	Right-handed alpha
Helix 89	89	F	118	124	Right-handed 310
Helix 90	90	F	135	150	Right-handed alpha
Helix 91	91	F	161	168	Right-handed alpha
Helix 92	92	F	186	191	Right-handed 310
Helix 93	93	F	195	205	Right-handed alpha
Helix 94	94	F	210	234	Right-handed alpha
Helix 95	95	F	238	248	Right-handed alpha
Helix 96	96	F	250	259	Right-handed alpha
Helix 97	97	F	262	267	Right-handed alpha
Helix 98	98	F	270	293	Right-handed alpha
Helix 99	99	F	300	307	Right-handed alpha
Helix 100	100	F	308	311	Right-handed 310
Helix 101	101	F	318	320	Right-handed 310
Helix 102	102	F	321	340	Right-handed alpha
Helix 103	103	F	341	343	Right-handed 310
Helix 104	104	F	357	361	Right-handed 310
Helix 105	105	F	366	374	Right-handed alpha
Helix 106	106	F	387	396	Right-handed alpha
Helix 107	107	F	396	406	Right-handed alpha
Helix 108	108	F	419	431	Right-handed alpha
Helix 109	109	F	463	469	Right-handed alpha
Helix 110	110	G	95	104	Right-handed alpha
Helix 111	111	G	118	124	Right-handed 310
Helix 112	112	G	135	150	Right-handed alpha
Helix 113	113	G	161	168	Right-handed alpha
Helix 114	114	G	186	191	Right-handed 310
Helix 115	115	G	195	205	Right-handed alpha
Helix 116	116	G	210	234	Right-handed alpha
Helix 117	117	G	238	248	Right-handed alpha
Helix 118	118	G	250	259	Right-handed alpha
Helix 119	119	G	262	267	Right-handed alpha
Helix 120	120	G	270	293	Right-handed alpha
Helix 121	121	G	300	307	Right-handed alpha
Helix 122	122	G	308	311	Right-handed 310
Helix 123	123	G	318	320	Right-handed 310
Helix 124	124	G	321	340	Right-handed alpha
Helix 125	125	G	357	361	Right-handed 310
Helix 126	126	G	366	374	Right-handed alpha
Helix 127	127	G	387	396	Right-handed alpha
Helix 128	128	G	396	406	Right-handed alpha
Helix 129	129	G	419	431	Right-handed alpha
Helix 130	130	G	463	469	Right-handed alpha

There are 18 sheets in PDB entry 1GL7. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, A, DB, C, EA, EB, EC, FA, FB, FC, GA, GB, GC,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	90	first strand
Strand 2	A	432	436	anti-parallel
Strand 3	A	456	460	anti-parallel

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There are 10 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	485	489	parallel
Strand 3	A	474	478	anti-parallel
Strand 4	A	409	412	anti-parallel
Strand 5	A	126	129	parallel
Strand 6	A	379	385	parallel
Strand 7	A	351	355	parallel
Strand 8	A	153	159	parallel
Strand 9	A	313	317	parallel
Strand 10	A	173	175	parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	112	first strand
Strand 2	A	115	116	anti-parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	90	first strand
Strand 2	B	432	437	anti-parallel
Strand 3	B	455	460	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	112	first strand
Strand 2	B	115	116	anti-parallel

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There are 9 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	175	first strand
Strand 2	B	313	317	parallel
Strand 3	B	153	159	parallel
Strand 4	B	351	355	parallel
Strand 5	B	379	385	parallel
Strand 6	B	126	129	parallel
Strand 7	B	409	412	parallel
Strand 8	B	474	478	anti-parallel
Strand 9	B	485	489	anti-parallel

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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	90	first strand
Strand 2	D	432	437	anti-parallel
Strand 3	D	455	460	anti-parallel

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There are 10 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	94	first strand
Strand 2	D	485	489	parallel
Strand 3	D	474	478	anti-parallel
Strand 4	D	409	412	anti-parallel
Strand 5	D	126	129	parallel
Strand 6	D	379	385	parallel
Strand 7	D	351	355	parallel
Strand 8	D	153	159	parallel
Strand 9	D	313	317	parallel
Strand 10	D	173	175	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	112	first strand
Strand 2	D	115	117	anti-parallel

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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	90	first strand
Strand 2	E	432	437	anti-parallel
Strand 3	E	455	460	anti-parallel

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There are 10 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	94	first strand
Strand 2	E	485	489	parallel
Strand 3	E	474	478	anti-parallel
Strand 4	E	409	412	anti-parallel
Strand 5	E	126	129	parallel
Strand 6	E	379	385	parallel
Strand 7	E	351	355	parallel
Strand 8	E	153	159	parallel
Strand 9	E	313	317	parallel
Strand 10	E	173	175	parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	111	112	first strand
Strand 2	E	115	116	anti-parallel

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There are 3 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	90	first strand
Strand 2	F	432	436	anti-parallel
Strand 3	F	456	460	anti-parallel

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There are 10 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	93	95	first strand
Strand 2	F	485	489	parallel
Strand 3	F	474	478	anti-parallel
Strand 4	F	409	412	anti-parallel
Strand 5	F	126	129	parallel
Strand 6	F	379	385	parallel
Strand 7	F	351	355	parallel
Strand 8	F	153	159	parallel
Strand 9	F	313	317	parallel
Strand 10	F	173	175	parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	111	112	first strand
Strand 2	F	115	116	anti-parallel

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There are 3 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	90	first strand
Strand 2	G	432	436	anti-parallel
Strand 3	G	456	460	anti-parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	110	112	first strand
Strand 2	G	115	117	anti-parallel

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There are 9 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	173	175	first strand
Strand 2	G	313	317	parallel
Strand 3	G	153	159	parallel
Strand 4	G	351	355	parallel
Strand 5	G	379	385	parallel
Strand 6	G	126	129	parallel
Strand 7	G	409	412	parallel
Strand 8	G	474	478	anti-parallel
Strand 9	G	486	489	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1GL7

Analysis of interatomic Contacts of Structural Units in PDB entry:
1GL7