Analysis of interatomic Contacts of Structural Units in PDB entry:
1GL9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1GL9 entry

There are 2 chains in PDB entry 1GL9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ILE 2	ASP 1054
C	PRO 3	ASP 1054

There are 79 helices in PDB entry 1GL9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	39	54	Right-handed alpha
Helix 2	2	B	58	70	Right-handed alpha
Helix 3	3	B	83	97	Right-handed alpha
Helix 4	4	B	108	124	Right-handed alpha
Helix 5	5	B	142	151	Right-handed alpha
Helix 6	6	B	163	170	Right-handed alpha
Helix 7	7	B	184	189	Right-handed alpha
Helix 8	8	B	190	201	Right-handed alpha
Helix 9	9	B	233	241	Right-handed alpha
Helix 10	10	B	267	272	Right-handed alpha
Helix 11	11	B	284	293	Right-handed alpha
Helix 12	12	B	310	317	Right-handed alpha
Helix 13	13	B	326	333	Right-handed alpha
Helix 14	14	B	334	337	Right-handed 310
Helix 15	15	B	365	367	Right-handed 310
Helix 16	16	B	368	374	Right-handed alpha
Helix 17	17	B	381	386	Right-handed alpha
Helix 18	18	B	393	403	Right-handed alpha
Helix 19	19	B	425	435	Right-handed alpha
Helix 20	20	B	455	468	Right-handed alpha
Helix 21	21	B	481	497	Right-handed alpha
Helix 22	22	B	498	501	Right-handed 310
Helix 23	23	B	513	523	Right-handed alpha
Helix 24	24	B	609	624	Right-handed alpha
Helix 25	25	B	633	647	Right-handed alpha
Helix 26	26	B	662	670	Right-handed alpha
Helix 27	27	B	677	705	Right-handed alpha
Helix 28	28	B	715	726	Right-handed alpha
Helix 29	29	B	727	732	Right-handed alpha
Helix 30	30	B	775	786	Right-handed alpha
Helix 31	31	B	790	804	Right-handed alpha
Helix 32	32	B	818	830	Right-handed alpha
Helix 33	33	B	854	865	Right-handed alpha
Helix 34	34	B	873	892	Right-handed alpha
Helix 35	35	B	921	927	Right-handed alpha
Helix 36	36	B	957	969	Right-handed alpha
Helix 37	37	B	975	986	Right-handed alpha
Helix 38	38	B	999	1014	Right-handed alpha
Helix 39	39	B	1013	1018	Right-handed alpha
Helix 40	40	B	1018	1034	Right-handed alpha
Helix 41	41	B	1038	1052	Right-handed alpha
Helix 42	42	C	39	54	Right-handed alpha
Helix 43	43	C	58	70	Right-handed alpha
Helix 44	44	C	83	97	Right-handed alpha
Helix 45	45	C	109	124	Right-handed alpha
Helix 46	46	C	142	151	Right-handed alpha
Helix 47	47	C	163	169	Right-handed alpha
Helix 48	48	C	184	189	Right-handed alpha
Helix 49	49	C	190	202	Right-handed alpha
Helix 50	50	C	233	241	Right-handed alpha
Helix 51	51	C	270	274	Right-handed 310
Helix 52	52	C	284	293	Right-handed alpha
Helix 53	53	C	310	317	Right-handed alpha
Helix 54	54	C	326	333	Right-handed alpha
Helix 55	55	C	334	337	Right-handed 310
Helix 56	56	C	365	367	Right-handed 310
Helix 57	57	C	368	374	Right-handed alpha
Helix 58	58	C	381	386	Right-handed alpha
Helix 59	59	C	425	435	Right-handed alpha
Helix 60	60	C	455	468	Right-handed alpha
Helix 61	61	C	481	497	Right-handed alpha
Helix 62	62	C	498	501	Right-handed 310
Helix 63	63	C	513	522	Right-handed alpha
Helix 64	64	C	609	624	Right-handed alpha
Helix 65	65	C	633	647	Right-handed alpha
Helix 66	66	C	662	671	Right-handed alpha
Helix 67	67	C	677	705	Right-handed alpha
Helix 68	68	C	715	726	Right-handed alpha
Helix 69	69	C	775	786	Right-handed alpha
Helix 70	70	C	790	803	Right-handed alpha
Helix 71	71	C	818	829	Right-handed alpha
Helix 72	72	C	854	865	Right-handed alpha
Helix 73	73	C	873	891	Right-handed alpha
Helix 74	74	C	921	927	Right-handed alpha
Helix 75	75	C	957	968	Right-handed alpha
Helix 76	76	C	972	986	Right-handed alpha
Helix 77	77	C	999	1012	Right-handed alpha
Helix 78	78	C	1018	1035	Right-handed alpha
Helix 79	79	C	1039	1052	Right-handed alpha

There are 23 sheets in PDB entry 1GL9. Click on sheet of interest to get list of strands forming it: BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, CK,

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	20	21	parallel
Strand 3	B	575	580	anti-parallel
Strand 4	B	557	559	anti-parallel

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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	20	21	parallel
Strand 3	B	575	580	anti-parallel
Strand 4	B	568	569	anti-parallel

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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	76	first strand
Strand 2	B	219	223	parallel
Strand 3	B	178	181	parallel
Strand 4	B	102	106	parallel
Strand 5	B	158	162	parallel
Strand 6	B	134	137	parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	259	first strand
Strand 2	B	448	452	parallel
Strand 3	B	345	349	parallel
Strand 4	B	278	282	parallel
Strand 5	B	322	325	parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	356	first strand
Strand 2	B	421	424	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	439	440	first strand
Strand 2	B	443	444	anti-parallel

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There are 6 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	532	first strand
Strand 2	B	535	539	anti-parallel
Strand 3	B	546	551	anti-parallel
Strand 4	B	506	511	parallel
Strand 5	B	625	628	parallel
Strand 6	B	652	655	parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	738	739	first strand
Strand 2	B	746	747	anti-parallel

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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	753	755	first strand
Strand 2	B	942	944	anti-parallel

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There are 3 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	758	759	first strand
Strand 2	B	895	906	anti-parallel
Strand 3	B	763	768	anti-parallel

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There are 3 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	758	759	first strand
Strand 2	B	895	906	anti-parallel
Strand 3	B	909	920	anti-parallel

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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	989	992	first strand
Strand 2	B	995	998	anti-parallel

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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	575	579	anti-parallel
Strand 3	C	558	559	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	21	first strand
Strand 2	C	575	579	anti-parallel
Strand 3	C	568	569	anti-parallel

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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	76	first strand
Strand 2	C	219	223	parallel
Strand 3	C	178	181	parallel
Strand 4	C	102	106	parallel
Strand 5	C	158	162	parallel
Strand 6	C	134	137	parallel

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There are 7 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	243	first strand
Strand 2	C	528	532	anti-parallel
Strand 3	C	535	539	anti-parallel
Strand 4	C	545	551	anti-parallel
Strand 5	C	505	511	parallel
Strand 6	C	625	628	parallel
Strand 7	C	652	655	parallel

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There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	259	first strand
Strand 2	C	449	452	parallel
Strand 3	C	345	349	parallel
Strand 4	C	278	282	parallel
Strand 5	C	322	325	parallel

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There are 2 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	356	first strand
Strand 2	C	421	424	anti-parallel

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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	439	440	first strand
Strand 2	C	443	444	anti-parallel

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There are 2 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	738	739	first strand
Strand 2	C	746	747	anti-parallel

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There are 2 strands in CI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	753	755	first strand
Strand 2	C	942	944	anti-parallel

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There are 3 strands in CJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	758	768	first strand
Strand 2	C	895	904	anti-parallel
Strand 3	C	913	920	anti-parallel

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There are 2 strands in CK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	989	992	first strand
Strand 2	C	995	998	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1GL9

Analysis of interatomic Contacts of Structural Units in PDB entry:
1GL9