Analysis of interatomic Contacts of Structural Units in PDB entry:
1GME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GME entry

There are 4 chains in PDB entry 1GME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 151
B
 ASN 43GLY 151
C
 SER 2GLY 151
D
 ALA 42GLY 151
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1GME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 18Right-handed 310
Helix 2
2
A
19 28Right-handed alpha
Helix 3
3
A
29 31Right-handed 310
Helix 4
4
A
37 42Right-handed alpha
Helix 5
5
A
65 67Right-handed 310
Helix 6
6
A
117 121Right-handed 310
Helix 7
7
B
117 121Right-handed 310
Helix 8
8
C
14 18Right-handed 310
Helix 9
9
C
19 28Right-handed alpha
Helix 10
10
C
29 31Right-handed 310
Helix 11
11
C
37 42Right-handed alpha
Helix 12
12
D
65 67Right-handed 310
Helix 13
13
D
117 121Right-handed 310
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There are 8 sheets in PDB entry 1GME. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, CA, CB, CC, A,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 126first strand
Strand 2
A
129 135anti-parallel
Strand 3
A
54 60anti-parallel
Strand 4
A
46 50anti-parallel
Strand 5
B
96 98anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
78 83anti-parallel
Strand 3
A
106 111anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
B
46 50anti-parallel
Strand 3
B
54 60anti-parallel
Strand 4
B
129 135anti-parallel
Strand 5
B
122 126anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 74first strand
Strand 2
B
78 85anti-parallel
Strand 3
B
104 111anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 10first strand
Strand 2
C
106 111parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
69 74anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
122 126first strand
Strand 2
C
129 135anti-parallel
Strand 3
C
54 60anti-parallel
Strand 4
C
46 50anti-parallel
Strand 5
D
95 99anti-parallel
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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
95 99first strand
Strand 2
D
46 50anti-parallel
Strand 3
D
54 60anti-parallel
Strand 4
D
129 135anti-parallel
Strand 5
D
122 125anti-parallel
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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
69 74first strand
Strand 2
D
78 85anti-parallel
Strand 3
D
104 111anti-parallel
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