Analysis of interatomic Contacts of Structural Units in PDB entry:
1GML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GML entry

There are 4 chains in PDB entry 1GML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 211ALA 379
B
 VAL 214ALA 379
C
 ASP 211ALA 379
D
 SER 212ALA 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1GML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
263 284Right-handed alpha
Helix 2
2
A
297 307Right-handed alpha
Helix 3
3
A
316 328Right-handed alpha
Helix 4
4
A
334 338Right-handed 310
Helix 5
5
A
339 343Right-handed 310
Helix 6
6
B
263 284Right-handed alpha
Helix 7
7
B
297 307Right-handed alpha
Helix 8
8
B
316 328Right-handed alpha
Helix 9
9
B
334 338Right-handed 310
Helix 10
10
B
339 343Right-handed 310
Helix 11
11
C
263 284Right-handed alpha
Helix 12
12
C
297 307Right-handed alpha
Helix 13
13
C
316 328Right-handed alpha
Helix 14
14
C
334 338Right-handed 310
Helix 15
15
C
339 343Right-handed 310
Helix 16
16
C
368 372Right-handed 310
Helix 17
17
D
268 284Right-handed alpha
Helix 18
18
D
297 307Right-handed alpha
Helix 19
19
D
316 328Right-handed alpha
Helix 20
20
D
334 338Right-handed 310
Helix 21
21
D
339 343Right-handed 310
Helix 22
22
D
368 372Right-handed 310
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There are 8 sheets in PDB entry 1GML. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
232 234first strand
Strand 2
A
347 355anti-parallel
Strand 3
A
358 366anti-parallel
Strand 4
A
214 220anti-parallel
Strand 5
A
373 377anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 312first strand
Strand 2
A
289 292parallel
Strand 3
A
238 241parallel
Strand 4
A
331 332parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
232 234first strand
Strand 2
B
347 355anti-parallel
Strand 3
B
358 366anti-parallel
Strand 4
B
215 220anti-parallel
Strand 5
B
373 376anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 312first strand
Strand 2
B
289 292parallel
Strand 3
B
238 241parallel
Strand 4
B
331 332parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
232 234first strand
Strand 2
C
347 355anti-parallel
Strand 3
C
358 366anti-parallel
Strand 4
C
214 220anti-parallel
Strand 5
C
374 377anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
238 241first strand
Strand 2
C
289 292parallel
Strand 3
C
310 312parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
232 234first strand
Strand 2
D
347 355anti-parallel
Strand 3
D
358 366anti-parallel
Strand 4
D
214 220anti-parallel
Strand 5
D
374 377anti-parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
238 241first strand
Strand 2
D
289 292parallel
Strand 3
D
310 312parallel
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