Analysis of interatomic Contacts of Structural Units in PDB entry:
1GMO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1GMO entry

There are 8 chains in PDB entry 1GMO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 37	VAL 209
B	ASN 37	VAL 209
C	ASN 37	VAL 209
D	ASN 37	VAL 209
E	ASN 37	GLU 210
F	ASN 37	GLU 210
G	THR 38	VAL 209
H	THR 38	VAL 209

There are 30 helices in PDB entry 1GMO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	40	Right-handed 310
Helix 2	AA2	A	66	76	Right-handed alpha
Helix 3	AA3	A	123	125	Right-handed 310
Helix 4	AA4	A	164	168	Right-handed 310
Helix 5	AA5	B	38	40	Right-handed 310
Helix 6	AA6	B	66	76	Right-handed alpha
Helix 7	AA7	B	123	125	Right-handed 310
Helix 8	AA8	B	164	168	Right-handed 310
Helix 9	AA9	C	38	40	Right-handed 310
Helix 10	AB1	C	66	76	Right-handed alpha
Helix 11	AB2	C	123	125	Right-handed 310
Helix 12	AB3	C	163	167	Right-handed 310
Helix 13	AB4	D	38	40	Right-handed 310
Helix 14	AB5	D	66	77	Right-handed alpha
Helix 15	AB6	D	123	125	Right-handed 310
Helix 16	AB7	D	163	167	Right-handed 310
Helix 17	AB8	E	38	40	Right-handed 310
Helix 18	AB9	E	66	76	Right-handed alpha
Helix 19	AC1	E	123	125	Right-handed 310
Helix 20	AC2	E	164	168	Right-handed 310
Helix 21	AC3	F	38	40	Right-handed 310
Helix 22	AC4	F	66	76	Right-handed alpha
Helix 23	AC5	F	123	125	Right-handed 310
Helix 24	AC6	G	38	40	Right-handed 310
Helix 25	AC7	G	66	76	Right-handed alpha
Helix 26	AC8	G	123	125	Right-handed 310
Helix 27	AC9	G	164	168	Right-handed 310
Helix 28	AD1	H	38	40	Right-handed 310
Helix 29	AD2	H	66	76	Right-handed alpha
Helix 30	AD3	H	123	125	Right-handed 310

There are 22 sheets in PDB entry 1GMO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	116	121	anti-parallel
Strand 3	A	86	90	anti-parallel
Strand 4	A	95	99	anti-parallel
Strand 5	A	60	63	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	52	first strand
Strand 2	A	108	112	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	190	first strand
Strand 2	A	198	200	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	46	first strand
Strand 2	B	116	121	anti-parallel
Strand 3	B	86	90	anti-parallel
Strand 4	B	95	99	anti-parallel
Strand 5	B	60	63	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	51	first strand
Strand 2	B	109	111	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	190	first strand
Strand 2	B	198	200	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	46	first strand
Strand 2	C	116	121	anti-parallel
Strand 3	C	86	90	anti-parallel
Strand 4	C	95	99	anti-parallel
Strand 5	C	60	63	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	108	110	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	190	first strand
Strand 2	C	198	200	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	46	first strand
Strand 2	D	116	121	anti-parallel
Strand 3	D	86	90	anti-parallel
Strand 4	D	95	99	anti-parallel
Strand 5	D	61	63	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	52	first strand
Strand 2	D	108	111	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	190	first strand
Strand 2	D	198	200	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	51	first strand
Strand 2	E	109	121	anti-parallel
Strand 3	E	86	90	anti-parallel
Strand 4	E	95	99	anti-parallel
Strand 5	E	60	63	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	188	190	first strand
Strand 2	E	198	200	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	42	46	first strand
Strand 2	F	117	121	anti-parallel
Strand 3	F	86	90	anti-parallel
Strand 4	F	95	99	anti-parallel
Strand 5	F	60	63	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	50	51	first strand
Strand 2	F	109	110	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	188	190	first strand
Strand 2	F	198	200	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	49	first strand
Strand 2	G	111	121	anti-parallel
Strand 3	G	86	90	anti-parallel
Strand 4	G	95	99	anti-parallel
Strand 5	G	60	63	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	188	190	first strand
Strand 2	G	198	200	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	42	46	first strand
Strand 2	H	116	121	anti-parallel
Strand 3	H	86	90	anti-parallel
Strand 4	H	95	99	anti-parallel
Strand 5	H	60	63	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	49	51	first strand
Strand 2	H	109	111	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	188	190	first strand
Strand 2	H	198	200	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1GMO

Analysis of interatomic Contacts of Structural Units in PDB entry:
1GMO