Analysis of interatomic Contacts of Structural Units in PDB entry:
1GMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GMU entry

There are 4 chains in PDB entry 1GMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 138
B
 MET 1ALA 138
C
 MET 1ALA 140
D
 MET 1ALA 138
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1GMU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 26Right-handed alpha
Helix 2
2
A
81 95Right-handed alpha
Helix 3
3
A
111 120Right-handed alpha
Helix 4
4
B
21 26Right-handed alpha
Helix 5
5
B
81 95Right-handed alpha
Helix 6
6
B
111 120Right-handed alpha
Helix 7
7
C
21 26Right-handed alpha
Helix 8
8
C
81 95Right-handed alpha
Helix 9
9
C
111 120Right-handed alpha
Helix 10
10
C
135 139Right-handed 310
Helix 11
11
D
21 26Right-handed alpha
Helix 12
12
D
81 95Right-handed alpha
Helix 13
13
D
111 120Right-handed alpha
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There are 12 sheets in PDB entry 1GMU. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
39 43parallel
Strand 3
A
29 33anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
55 57anti-parallel
Strand 3
A
64 69anti-parallel
Strand 4
A
16 20parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
105 109anti-parallel
Strand 3
A
71 78anti-parallel
Strand 4
A
125 131anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 4first strand
Strand 2
B
39 43parallel
Strand 3
B
29 33anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 7first strand
Strand 2
B
55 57anti-parallel
Strand 3
B
65 69anti-parallel
Strand 4
B
16 20parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
105 109anti-parallel
Strand 3
B
71 78anti-parallel
Strand 4
B
125 131anti-parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
C
39 43parallel
Strand 3
C
29 33anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 7first strand
Strand 2
C
55 57anti-parallel
Strand 3
C
64 69anti-parallel
Strand 4
C
16 20parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 102first strand
Strand 2
C
105 109anti-parallel
Strand 3
C
71 78anti-parallel
Strand 4
C
125 131anti-parallel
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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 4first strand
Strand 2
D
39 43parallel
Strand 3
D
29 33anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
6 7first strand
Strand 2
D
55 57anti-parallel
Strand 3
D
64 69anti-parallel
Strand 4
D
16 20parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
100 102first strand
Strand 2
D
105 109anti-parallel
Strand 3
D
71 78anti-parallel
Strand 4
D
125 131anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il