Analysis of interatomic Contacts of Structural Units in PDB entry:
1GOI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GOI entry

There are 2 chains in PDB entry 1GOI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ALA 499
B
 THR 3ALA 499
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1GOI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 19Right-handed alpha
Helix 2
2
A
33 35Right-handed 310
Helix 3
3
A
38 43Right-handed alpha
Helix 4
4
A
68 84Right-handed alpha
Helix 5
5
A
97 100Right-handed alpha
Helix 6
6
A
107 113Right-handed alpha
Helix 7
7
A
117 134Right-handed alpha
Helix 8
8
A
148 171Right-handed alpha
Helix 9
9
A
175 177Right-handed 310
Helix 10
10
A
189 194Right-handed alpha
Helix 11
11
A
196 204Right-handed 310
Helix 12
12
A
242 245Right-handed 310
Helix 13
13
A
252 258Right-handed alpha
Helix 14
14
A
267 275Right-handed alpha
Helix 15
15
A
282 284Right-handed 310
Helix 16
16
A
329 334Right-handed alpha
Helix 17
17
A
342 350Right-handed alpha
Helix 18
18
A
382 394Right-handed alpha
Helix 19
19
A
405 407Right-handed 310
Helix 20
20
A
413 423Right-handed alpha
Helix 21
21
B
15 19Right-handed alpha
Helix 22
22
B
33 35Right-handed 310
Helix 23
23
B
38 43Right-handed alpha
Helix 24
24
B
68 84Right-handed alpha
Helix 25
25
B
97 100Right-handed alpha
Helix 26
26
B
107 113Right-handed alpha
Helix 27
27
B
117 134Right-handed alpha
Helix 28
28
B
148 171Right-handed 310
Helix 29
29
B
175 177Right-handed 310
Helix 30
30
B
189 194Right-handed alpha
Helix 31
31
B
196 204Right-handed 310
Helix 32
32
B
242 245Right-handed 310
Helix 33
33
B
252 258Right-handed alpha
Helix 34
34
B
267 276Right-handed alpha
Helix 35
35
B
282 284Right-handed 310
Helix 36
36
B
329 333Right-handed alpha
Helix 37
37
B
342 350Right-handed alpha
Helix 38
38
B
382 394Right-handed alpha
Helix 39
39
B
405 407Right-handed 310
Helix 40
40
B
413 423Right-handed alpha
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There are 6 sheets in PDB entry 1GOI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 402first strand
Strand 2
A
6 12parallel
Strand 3
A
46 50parallel
Strand 4
A
89 95parallel
Strand 5
A
138 142parallel
Strand 6
A
180 186parallel
Strand 7
A
208 212parallel
Strand 8
A
285 290parallel
Strand 9
A
399 403parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 341first strand
Strand 2
A
292 297anti-parallel
Strand 3
A
375 378anti-parallel
Strand 4
A
365 370anti-parallel
Strand 5
A
355 360anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 470first strand
Strand 2
A
473 477anti-parallel
Strand 3
A
492 497anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
399 402first strand
Strand 2
B
6 12parallel
Strand 3
B
46 50parallel
Strand 4
B
89 95parallel
Strand 5
B
138 142parallel
Strand 6
B
180 186parallel
Strand 7
B
208 212parallel
Strand 8
B
285 290parallel
Strand 9
B
399 403parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 341first strand
Strand 2
B
292 297anti-parallel
Strand 3
B
375 378anti-parallel
Strand 4
B
365 370anti-parallel
Strand 5
B
355 360anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
467 470first strand
Strand 2
B
473 477anti-parallel
Strand 3
B
492 497anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il