Analysis of interatomic Contacts of Structural Units in PDB entry:
1GOJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GOJ entry

There is 1 chain in PDB entry 1GOJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLN 355
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1GOJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 23Right-handed alpha
Helix 2
2
A
60 69Right-handed alpha
Helix 3
3
A
69 77Right-handed alpha
Helix 4
4
A
93 99Right-handed alpha
Helix 5
5
A
110 125Right-handed alpha
Helix 6
6
A
179 201Right-handed alpha
Helix 7
7
A
204 208Right-handed 310
Helix 8
8
A
255 259Right-handed 310
Helix 9
9
A
260 275Right-handed alpha
Helix 10
10
A
281 284Right-handed 310
Helix 11
11
A
285 291Right-handed alpha
Helix 12
12
A
292 295Right-handed 310
Helix 13
13
A
313 329Right-handed alpha
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There are 4 sheets in PDB entry 1GOJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
9 14parallel
Strand 3
A
300 307parallel
Strand 4
A
82 87parallel
Strand 5
A
226 235parallel
Strand 6
A
209 220anti-parallel
Strand 7
A
130 142anti-parallel
Strand 8
A
175 176anti-parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
9 14parallel
Strand 3
A
300 307parallel
Strand 4
A
82 87parallel
Strand 5
A
226 235parallel
Strand 6
A
209 220anti-parallel
Strand 7
A
130 142anti-parallel
Strand 8
A
145 148anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
37 40anti-parallel
Strand 3
A
47 50anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 162first strand
Strand 2
A
166 169anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il