Analysis of interatomic Contacts of Structural Units in PDB entry:
1GPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GPE entry

There are 2 chains in PDB entry 1GPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
TYR 1ALA 587
B
TYR 1ALA 587
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 1GPE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
10 12Right-handed 310
Helix 2
2
A
17 19Right-handed 310
Helix 3
3
A
34 45Right-handed alpha
Helix 4
4
A
65 68Right-handed alpha
Helix 5
5
A
70 72Right-handed 310
Helix 6
6
A
106 109Right-handed 310
Helix 7
7
A
120 128Right-handed alpha
Helix 8
8
A
137 146Right-handed alpha
Helix 9
9
A
155 160Right-handed alpha
Helix 10
10
A
166 168Right-handed 310
Helix 11
11
A
189 200Right-handed alpha
Helix 12
12
A
232 236Right-handed alpha
Helix 13
13
A
298 304Right-handed alpha
Helix 14
14
A
310 316Right-handed alpha
Helix 15
15
A
344 346Right-handed 310
Helix 16
16
A
358 375Right-handed alpha
Helix 17
17
A
377 386Right-handed alpha
Helix 18
18
A
393 409Right-handed alpha
Helix 19
19
A
447 449Right-handed 310
Helix 20
20
A
462 480Right-handed alpha
Helix 21
21
A
482 487Right-handed 310
Helix 22
22
A
495 497Right-handed 310
Helix 23
23
A
504 513Right-handed alpha
Helix 24
24
A
530 532Right-handed 310
Helix 25
25
A
565 585Right-handed alpha
Helix 26
26
B
10 12Right-handed 310
Helix 27
27
B
17 19Right-handed 310
Helix 28
28
B
34 45Right-handed alpha
Helix 29
29
B
65 68Right-handed alpha
Helix 30
30
B
70 72Right-handed 310
Helix 31
31
B
106 109Right-handed 310
Helix 32
32
B
120 128Right-handed alpha
Helix 33
33
B
137 147Right-handed alpha
Helix 34
34
B
155 160Right-handed alpha
Helix 35
35
B
166 168Right-handed 310
Helix 36
36
B
189 200Right-handed alpha
Helix 37
37
B
232 236Right-handed alpha
Helix 38
38
B
298 304Right-handed alpha
Helix 39
39
B
310 315Right-handed alpha
Helix 40
40
B
344 346Right-handed 310
Helix 41
41
B
358 375Right-handed alpha
Helix 42
42
B
377 386Right-handed alpha
Helix 43
43
B
393 409Right-handed alpha
Helix 44
44
B
447 449Right-handed 310
Helix 45
45
B
462 480Right-handed alpha
Helix 46
46
B
482 487Right-handed alpha
Helix 47
47
B
495 497Right-handed 310
Helix 48
48
B
504 513Right-handed alpha
Helix 49
49
B
530 532Right-handed 310
Helix 50
50
B
565 584Right-handed alpha
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There are 12 sheets in PDB entry 1GPE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
548 550first strand
Strand 2
A
288 291parallel
Strand 3
A
27 30parallel
Strand 4
A
51 55parallel
Strand 5
A
246 250parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
148 150first strand
Strand 2
A
175 177parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
215 217first strand
Strand 2
A
351 357anti-parallel
Strand 3
A
413 420anti-parallel
Strand 4
A
424 431anti-parallel
Strand 5
A
335 341anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
259 262first strand
Strand 2
A
265 268anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
439 442first strand
Strand 2
A
452 455anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
253 258first strand
Strand 2
A
270 276anti-parallel
Strand 3
A
279 284anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
548 550first strand
Strand 2
B
288 291parallel
Strand 3
B
27 30parallel
Strand 4
B
51 55parallel
Strand 5
B
246 250parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
148 150first strand
Strand 2
B
175 177parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
215 217first strand
Strand 2
B
351 357anti-parallel
Strand 3
B
413 420anti-parallel
Strand 4
B
424 431anti-parallel
Strand 5
B
335 341anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
259 262first strand
Strand 2
B
265 268anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
439 442first strand
Strand 2
B
452 455anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
253 258first strand
Strand 2
B
270 276anti-parallel
Strand 3
B
279 284anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il