Analysis of interatomic Contacts of Structural Units in PDB entry:
1GPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GPJ entry

There is 1 chain in PDB entry 1GPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1GPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 23Right-handed alpha
Helix 2
2
A
28 37Right-handed alpha
Helix 3
3
A
61 68Right-handed alpha
Helix 4
4
A
78 90Right-handed alpha
Helix 5
5
A
99 117Right-handed alpha
Helix 6
6
A
120 141Right-handed alpha
Helix 7
7
A
149 163Right-handed alpha
Helix 8
8
A
176 190Right-handed alpha
Helix 9
9
A
200 212Right-handed alpha
Helix 10
10
A
217 219Right-handed 310
Helix 11
11
A
220 227Right-handed alpha
Helix 12
12
A
243 254Right-handed alpha
Helix 13
13
A
274 278Right-handed 310
Helix 14
14
A
286 302Right-handed alpha
Helix 15
15
A
303 351Right-handed alpha
Helix 16
16
A
364 383Right-handed alpha
Helix 17
17
A
390 403Right-handed alpha
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There are 2 sheets in PDB entry 1GPJ. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 47first strand
Strand 2
A
50 56anti-parallel
Strand 3
A
4 10anti-parallel
Strand 4
A
74 77anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
193 197parallel
Strand 3
A
169 173parallel
Strand 4
A
230 233parallel
Strand 5
A
260 264parallel
Strand 6
A
281 285parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il