Analysis of interatomic Contacts of Structural Units in PDB entry:
1GPN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GPN entry

There is 1 chain in PDB entry 1GPN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4THR 535
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1GPN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 44Right-handed 310
Helix 2
2
A
78 83Right-handed alpha
Helix 3
3
A
127 131Right-handed 310
Helix 4
4
A
132 140Right-handed alpha
Helix 5
5
A
150 156Right-handed alpha
Helix 6
6
A
167 184Right-handed alpha
Helix 7
7
A
185 187Right-handed 310
Helix 8
8
A
200 212Right-handed alpha
Helix 9
9
A
215 219Right-handed 310
Helix 10
10
A
238 252Right-handed alpha
Helix 11
11
A
258 269Right-handed alpha
Helix 12
12
A
270 278Right-handed alpha
Helix 13
13
A
279 282Right-handed 310
Helix 14
14
A
304 312Right-handed alpha
Helix 15
15
A
328 334Right-handed alpha
Helix 16
16
A
348 360Right-handed alpha
Helix 17
17
A
364 376Right-handed alpha
Helix 18
18
A
383 400Right-handed alpha
Helix 19
19
A
400 415Right-handed alpha
Helix 20
20
A
433 437Right-handed 310
Helix 21
21
A
443 448Right-handed alpha
Helix 22
22
A
449 453Right-handed 310
Helix 23
23
A
453 457Right-handed 310
Helix 24
24
A
459 480Right-handed alpha
Helix 25
25
A
517 526Right-handed alpha
Helix 26
26
A
526 535Right-handed alpha
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There are 3 sheets in PDB entry 1GPN. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
13 16anti-parallel
Strand 3
A
57 59parallel
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There are 11 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 21first strand
Strand 2
A
26 34anti-parallel
Strand 3
A
96 101anti-parallel
Strand 4
A
142 145anti-parallel
Strand 5
A
109 115parallel
Strand 6
A
189 199parallel
Strand 7
A
221 225parallel
Strand 8
A
319 324parallel
Strand 9
A
418 423parallel
Strand 10
A
501 505parallel
Strand 11
A
512 514anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
295 296parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il