Analysis of interatomic Contacts of Structural Units in PDB entry:
1GPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GPP entry

There is 1 chain in PDB entry 1GPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2HIS 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1GPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 21Right-handed 310
Helix 2
2
A
133 135Right-handed 310
Helix 3
3
A
136 149Right-handed alpha
Helix 4
4
A
162 167Right-handed 310
Helix 5
5
A
168 175Right-handed alpha
Helix 6
6
A
183 413Right-handed 310
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There are 6 sheets in PDB entry 1GPP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-1 2first strand
Strand 2
A
421 436anti-parallel
Strand 3
A
42 52anti-parallel
Strand 4
A
72 76anti-parallel
Strand 5
A
-1 2anti-parallel
Strand 6
A
421 436anti-parallel
Strand 7
A
42 52anti-parallel
Strand 8
A
-1 2first strand
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
15 17anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 86first strand
Strand 2
A
154 160anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 96first strand
Strand 2
A
99 113anti-parallel
Strand 3
A
119 131anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
417 419anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 445first strand
Strand 2
A
451 452anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il