Analysis of interatomic Contacts of Structural Units in PDB entry:
1GQE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GQE entry

There is 1 chain in PDB entry 1GQE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4LEU 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1GQE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 25Right-handed alpha
Helix 2
2
A
26 43Right-handed alpha
Helix 3
3
A
44 48Right-handed 310
Helix 4
4
A
49 91Right-handed alpha
Helix 5
5
A
92 114Right-handed alpha
Helix 6
6
A
115 119Right-handed 310
Helix 7
7
A
137 159Right-handed alpha
Helix 8
8
A
187 193Right-handed alpha
Helix 9
9
A
194 196Right-handed 310
Helix 10
10
A
235 237Right-handed 310
Helix 11
11
A
279 307Right-handed alpha
Helix 12
12
A
329 331Right-handed 310
Helix 13
13
A
344 350Right-handed alpha
Helix 14
14
A
353 363Right-handed alpha
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There are 2 sheets in PDB entry 1GQE. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 170first strand
Strand 2
A
176 184anti-parallel
Strand 3
A
128 134anti-parallel
Strand 4
A
213 224anti-parallel
Strand 5
A
197 204anti-parallel
Strand 6
A
322 327parallel
Strand 7
A
332 335anti-parallel
Strand 8
A
341 342anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 244first strand
Strand 2
A
260 265anti-parallel
Strand 3
A
271 274anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il