Analysis of interatomic Contacts of Structural Units in PDB entry:
1GQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GQQ entry

There are 2 chains in PDB entry 1GQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 18ASN 475
B
 GLN 19ASN 475
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 1GQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 42Right-handed alpha
Helix 2
2
A
53 63Right-handed alpha
Helix 3
3
A
71 76Right-handed 310
Helix 4
4
A
91 100Right-handed alpha
Helix 5
5
A
107 117Right-handed alpha
Helix 6
6
A
128 143Right-handed alpha
Helix 7
7
A
206 219Right-handed alpha
Helix 8
8
A
232 243Right-handed alpha
Helix 9
9
A
289 305Right-handed alpha
Helix 10
10
A
309 319Right-handed alpha
Helix 11
11
A
349 364Right-handed alpha
Helix 12
12
A
377 393Right-handed alpha
Helix 13
13
A
415 427Right-handed alpha
Helix 14
14
A
436 438Right-handed 310
Helix 15
15
A
439 448Right-handed alpha
Helix 16
16
A
461 475Right-handed alpha
Helix 17
17
B
31 42Right-handed alpha
Helix 18
18
B
53 64Right-handed alpha
Helix 19
19
B
91 100Right-handed alpha
Helix 20
20
B
107 117Right-handed alpha
Helix 21
21
B
128 143Right-handed alpha
Helix 22
22
B
206 219Right-handed alpha
Helix 23
23
B
232 239Right-handed alpha
Helix 24
24
B
240 243Right-handed 310
Helix 25
25
B
289 305Right-handed alpha
Helix 26
26
B
309 319Right-handed alpha
Helix 27
27
B
349 362Right-handed alpha
Helix 28
28
B
377 384Right-handed alpha
Helix 29
29
B
384 393Right-handed alpha
Helix 30
30
B
415 427Right-handed alpha
Helix 31
31
B
436 438Right-handed 310
Helix 32
32
B
439 448Right-handed alpha
Helix 33
33
B
461 475Right-handed alpha
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There are 6 sheets in PDB entry 1GQQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
44 49parallel
Strand 3
A
20 24parallel
Strand 4
A
80 83parallel
Strand 5
A
104 106parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 150first strand
Strand 2
A
169 173parallel
Strand 3
A
119 124parallel
Strand 4
A
188 191parallel
Strand 5
A
225 229parallel
Strand 6
A
245 250parallel
Strand 7
A
257 265parallel
Strand 8
A
268 274anti-parallel
Strand 9
A
280 285anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 335first strand
Strand 2
A
338 345anti-parallel
Strand 3
A
452 458parallel
Strand 4
A
368 374parallel
Strand 5
A
397 400parallel
Strand 6
A
432 433parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 68first strand
Strand 2
B
44 49parallel
Strand 3
B
20 24parallel
Strand 4
B
80 83parallel
Strand 5
B
104 105parallel
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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
148 150first strand
Strand 2
B
169 174parallel
Strand 3
B
119 124parallel
Strand 4
B
188 191parallel
Strand 5
B
225 229parallel
Strand 6
B
246 250parallel
Strand 7
B
257 265parallel
Strand 8
B
268 274anti-parallel
Strand 9
B
280 285anti-parallel
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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 335first strand
Strand 2
B
338 345anti-parallel
Strand 3
B
453 457parallel
Strand 4
B
369 373parallel
Strand 5
B
397 400parallel
Strand 6
B
432 433parallel
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