Analysis of interatomic Contacts of Structural Units in PDB entry:
1GQX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GQX entry

There is 1 chain in PDB entry 1GQX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2VAL 287
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1GQX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
26 40Right-handed alpha
Helix 2
2
A
51 61Right-handed alpha
Helix 3
3
A
146 152Right-handed alpha
Helix 4
4
A
154 162Right-handed alpha
Helix 5
5
A
170 173Right-handed 310
Helix 6
6
A
183 189Right-handed alpha
Helix 7
7
A
225 237Right-handed alpha
Helix 8
8
A
238 241Right-handed 310
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There are 4 sheets in PDB entry 1GQX. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
14 17anti-parallel
Strand 3
A
42 45parallel
Strand 4
A
253 257anti-parallel
Strand 5
A
124 133anti-parallel
Strand 6
A
275 282anti-parallel
Strand 7
A
81 84anti-parallel
Strand 8
A
72 73anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 246first strand
Strand 2
A
141 145anti-parallel
Strand 3
A
261 265anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 196first strand
Strand 2
A
165 168anti-parallel
Strand 3
A
216 217anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
207 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il