Analysis of interatomic Contacts of Structural Units in PDB entry:
1GR7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GR7 entry

There are 8 chains in PDB entry 1GR7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2SER 25
A
 LYS 27LYS 128
B
 SER 3SER 25
B
 LYS 27LYS 128
C
 SER 3SER 25
C
 LYS 27LYS 128
D
 GLU 2SER 25
D
 LYS 27LYS 128
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 1GR7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 45Right-handed alpha
Helix 2
2
A
55 65Right-handed alpha
Helix 3
3
A
66 71Right-handed 310
Helix 4
4
A
100 102Right-handed 310
Helix 5
5
A
116 120Right-handed 310
Helix 6
6
B
40 45Right-handed alpha
Helix 7
7
B
55 65Right-handed alpha
Helix 8
8
B
66 71Right-handed 310
Helix 9
9
B
100 102Right-handed 310
Helix 10
10
B
116 120Right-handed 310
Helix 11
11
C
40 45Right-handed alpha
Helix 12
12
C
55 65Right-handed alpha
Helix 13
13
C
66 71Right-handed 310
Helix 14
14
C
100 102Right-handed 310
Helix 15
15
C
116 120Right-handed 310
Helix 16
16
D
40 45Right-handed alpha
Helix 17
17
D
55 65Right-handed alpha
Helix 18
18
D
66 71Right-handed 310
Helix 19
19
D
100 102Right-handed 310
Helix 20
20
D
116 120Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 1GR7. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
28 34parallel
Strand 3
A
92 98anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 22first strand
Strand 2
A
122 127parallel
Strand 3
A
108 111anti-parallel
Strand 4
A
49 52anti-parallel
Strand 5
A
82 83anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 8first strand
Strand 2
B
28 34parallel
Strand 3
B
92 98anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 22first strand
Strand 2
B
122 127parallel
Strand 3
B
108 111anti-parallel
Strand 4
B
49 52anti-parallel
Strand 5
B
82 83anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 8first strand
Strand 2
C
28 34parallel
Strand 3
C
92 98anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
19 23first strand
Strand 2
C
122 128parallel
Strand 3
C
108 111anti-parallel
Strand 4
C
49 52anti-parallel
Strand 5
C
82 83anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 8first strand
Strand 2
D
28 34parallel
Strand 3
D
92 98anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 22first strand
Strand 2
D
122 127parallel
Strand 3
D
108 111anti-parallel
Strand 4
D
49 52anti-parallel
Strand 5
D
82 83anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il