Analysis of interatomic Contacts of Structural Units in PDB entry:
1GRL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1GRL entry

There are 7 chains in PDB entry 1GRL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 6	ASP 523
B	VAL 6	ASP 523
C	VAL 6	ASP 523
D	VAL 6	ASP 523
E	VAL 6	ASP 523
F	VAL 6	ASP 523
G	VAL 6	ASP 523

There are133 helices in PDB entry 1GRL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	30	Right-handed alpha
Helix 2	2	A	53	59	Right-handed alpha
Helix 3	3	A	65	77	Right-handed alpha
Helix 4	4	A	79	85	Right-handed alpha
Helix 5	5	A	89	109	Right-handed alpha
Helix 6	6	A	113	134	Right-handed alpha
Helix 7	7	A	141	152	Right-handed alpha
Helix 8	8	A	156	169	Right-handed alpha
Helix 9	9	A	202	204	Right-handed 310
Helix 10	10	A	283	296	Right-handed alpha
Helix 11	11	A	339	355	Right-handed alpha
Helix 12	12	A	361	367	Right-handed alpha
Helix 13	13	A	369	372	Right-handed alpha
Helix 14	14	A	386	409	Right-handed alpha
Helix 15	15	A	417	422	Right-handed alpha
Helix 16	16	A	434	447	Right-handed alpha
Helix 17	17	A	449	458	Right-handed alpha
Helix 18	18	A	462	468	Right-handed alpha
Helix 19	19	A	497	515	Right-handed alpha
Helix 20	21	B	9	30	Right-handed alpha
Helix 21	22	B	53	59	Right-handed alpha
Helix 22	23	B	65	77	Right-handed alpha
Helix 23	24	B	79	85	Right-handed alpha
Helix 24	25	B	89	109	Right-handed alpha
Helix 25	26	B	113	134	Right-handed alpha
Helix 26	27	B	141	152	Right-handed alpha
Helix 27	28	B	156	169	Right-handed alpha
Helix 28	29	B	202	204	Right-handed 310
Helix 29	30	B	283	296	Right-handed alpha
Helix 30	31	B	339	355	Right-handed alpha
Helix 31	32	B	361	367	Right-handed alpha
Helix 32	33	B	369	372	Right-handed alpha
Helix 33	34	B	386	409	Right-handed alpha
Helix 34	35	B	417	422	Right-handed alpha
Helix 35	36	B	434	447	Right-handed alpha
Helix 36	37	B	449	458	Right-handed alpha
Helix 37	38	B	462	468	Right-handed alpha
Helix 38	39	B	497	515	Right-handed alpha
Helix 39	41	C	9	30	Right-handed alpha
Helix 40	42	C	53	59	Right-handed alpha
Helix 41	43	C	65	77	Right-handed alpha
Helix 42	44	C	79	85	Right-handed alpha
Helix 43	45	C	89	109	Right-handed alpha
Helix 44	46	C	113	134	Right-handed alpha
Helix 45	47	C	141	152	Right-handed alpha
Helix 46	48	C	156	169	Right-handed alpha
Helix 47	49	C	202	204	Right-handed 310
Helix 48	50	C	283	296	Right-handed alpha
Helix 49	51	C	339	355	Right-handed alpha
Helix 50	52	C	361	367	Right-handed alpha
Helix 51	53	C	369	372	Right-handed alpha
Helix 52	54	C	386	409	Right-handed alpha
Helix 53	55	C	417	422	Right-handed alpha
Helix 54	56	C	434	447	Right-handed alpha
Helix 55	57	C	449	458	Right-handed alpha
Helix 56	58	C	462	468	Right-handed alpha
Helix 57	59	C	497	515	Right-handed alpha
Helix 58	61	D	9	30	Right-handed alpha
Helix 59	62	D	53	59	Right-handed alpha
Helix 60	63	D	65	77	Right-handed alpha
Helix 61	64	D	79	85	Right-handed alpha
Helix 62	65	D	89	109	Right-handed alpha
Helix 63	66	D	113	134	Right-handed alpha
Helix 64	67	D	141	152	Right-handed alpha
Helix 65	68	D	156	169	Right-handed alpha
Helix 66	69	D	202	204	Right-handed 310
Helix 67	70	D	283	296	Right-handed alpha
Helix 68	71	D	339	355	Right-handed alpha
Helix 69	72	D	361	367	Right-handed alpha
Helix 70	73	D	369	372	Right-handed alpha
Helix 71	74	D	386	409	Right-handed alpha
Helix 72	75	D	417	422	Right-handed alpha
Helix 73	76	D	434	447	Right-handed alpha
Helix 74	77	D	449	458	Right-handed alpha
Helix 75	78	D	462	468	Right-handed alpha
Helix 76	79	D	497	515	Right-handed alpha
Helix 77	81	E	9	30	Right-handed alpha
Helix 78	82	E	53	59	Right-handed alpha
Helix 79	83	E	65	77	Right-handed alpha
Helix 80	84	E	79	85	Right-handed alpha
Helix 81	85	E	89	109	Right-handed alpha
Helix 82	86	E	113	134	Right-handed alpha
Helix 83	87	E	141	152	Right-handed alpha
Helix 84	88	E	156	169	Right-handed alpha
Helix 85	89	E	202	204	Right-handed 310
Helix 86	90	E	283	296	Right-handed alpha
Helix 87	91	E	339	355	Right-handed alpha
Helix 88	92	E	361	367	Right-handed alpha
Helix 89	93	E	369	372	Right-handed alpha
Helix 90	94	E	386	409	Right-handed alpha
Helix 91	95	E	417	422	Right-handed alpha
Helix 92	96	E	434	447	Right-handed alpha
Helix 93	97	E	449	458	Right-handed alpha
Helix 94	98	E	462	468	Right-handed alpha
Helix 95	99	E	497	515	Right-handed alpha
Helix 96	101	F	9	30	Right-handed alpha
Helix 97	102	F	53	59	Right-handed alpha
Helix 98	103	F	65	77	Right-handed alpha
Helix 99	104	F	79	85	Right-handed alpha
Helix 100	105	F	89	109	Right-handed alpha
Helix 101	106	F	113	134	Right-handed alpha
Helix 102	107	F	141	152	Right-handed alpha
Helix 103	108	F	156	169	Right-handed alpha
Helix 104	109	F	202	204	Right-handed 310
Helix 105	110	F	283	296	Right-handed alpha
Helix 106	111	F	339	355	Right-handed alpha
Helix 107	112	F	361	367	Right-handed alpha
Helix 108	113	F	369	372	Right-handed alpha
Helix 109	114	F	386	409	Right-handed alpha
Helix 110	115	F	417	422	Right-handed alpha
Helix 111	116	F	434	447	Right-handed alpha
Helix 112	117	F	449	458	Right-handed alpha
Helix 113	118	F	462	468	Right-handed alpha
Helix 114	119	F	497	515	Right-handed alpha
Helix 115	121	G	9	30	Right-handed alpha
Helix 116	122	G	53	59	Right-handed alpha
Helix 117	123	G	65	77	Right-handed alpha
Helix 118	124	G	79	85	Right-handed alpha
Helix 119	125	G	89	109	Right-handed alpha
Helix 120	126	G	113	134	Right-handed alpha
Helix 121	127	G	141	152	Right-handed alpha
Helix 122	128	G	156	169	Right-handed alpha
Helix 123	129	G	202	204	Right-handed 310
Helix 124	130	G	283	296	Right-handed alpha
Helix 125	131	G	339	355	Right-handed alpha
Helix 126	132	G	361	367	Right-handed alpha
Helix 127	133	G	369	372	Right-handed alpha
Helix 128	134	G	386	409	Right-handed alpha
Helix 129	135	G	417	422	Right-handed alpha
Helix 130	136	G	434	447	Right-handed alpha
Helix 131	137	G	449	458	Right-handed alpha
Helix 132	138	G	462	468	Right-handed alpha
Helix 133	139	G	497	515	Right-handed alpha

There are 35 sheets in PDB entry 1GRL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, 1, 2, 3, 4, 5, 6, 7, 8, 9,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	48	50	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	178	first strand
Strand 2	A	376	380	parallel
Strand 3	A	186	190	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	223	first strand
Strand 2	A	248	251	parallel

Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	413	first strand
Strand 2	A	494	496	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	476	479	first strand
Strand 2	A	484	487	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	48	50	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	178	first strand
Strand 2	B	376	380	parallel
Strand 3	B	186	190	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	223	first strand
Strand 2	B	248	251	parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	413	first strand
Strand 2	B	494	496	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	479	first strand
Strand 2	B	484	487	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	48	50	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	178	first strand
Strand 2	C	376	380	parallel
Strand 3	C	186	190	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	223	first strand
Strand 2	C	248	251	parallel

Back to list of sheets
Back to top of page

There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	413	first strand
Strand 2	C	494	496	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	476	479	first strand
Strand 2	C	484	487	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	38	40	first strand
Strand 2	D	48	50	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	178	first strand
Strand 2	D	376	380	parallel
Strand 3	D	186	190	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	223	first strand
Strand 2	D	248	251	parallel

Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	411	413	first strand
Strand 2	D	494	496	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	476	479	first strand
Strand 2	D	484	487	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	40	first strand
Strand 2	E	48	50	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	174	178	first strand
Strand 2	E	376	380	parallel
Strand 3	E	186	190	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	223	first strand
Strand 2	E	248	251	parallel

Back to list of sheets
Back to top of page

There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	411	413	first strand
Strand 2	E	494	496	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	476	479	first strand
Strand 2	E	484	487	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	40	first strand
Strand 2	F	48	50	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in 1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	174	178	first strand
Strand 2	F	376	380	parallel
Strand 3	F	186	190	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in 2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	220	223	first strand
Strand 2	F	248	251	parallel

Back to list of sheets
Back to top of page

There are 2 strands in 3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	411	413	first strand
Strand 2	F	494	496	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in 4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	476	479	first strand
Strand 2	F	484	487	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in 5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	38	40	first strand
Strand 2	G	48	50	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in 6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	174	178	first strand
Strand 2	G	376	380	parallel
Strand 3	G	186	190	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in 7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	220	223	first strand
Strand 2	G	248	251	parallel

Back to list of sheets
Back to top of page

There are 2 strands in 8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	411	413	first strand
Strand 2	G	494	496	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in 9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	476	479	first strand
Strand 2	G	484	487	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1GRL

Analysis of interatomic Contacts of Structural Units in PDB entry:
1GRL