Analysis of interatomic Contacts of Structural Units in PDB entry:
1GS0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GS0 entry

There are 2 chains in PDB entry 1GS0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 207GLN 557
B
 GLN 209GLN 557
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1GS0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
211 223Right-handed alpha
Helix 2
2
A
223 233Right-handed alpha
Helix 3
3
A
242 246Right-handed 310
Helix 4
4
A
247 267Right-handed alpha
Helix 5
5
A
271 285Right-handed alpha
Helix 6
6
A
299 321Right-handed alpha
Helix 7
7
A
332 341Right-handed alpha
Helix 8
8
A
352 365Right-handed alpha
Helix 9
9
A
387 392Right-handed alpha
Helix 10
10
A
407 409Right-handed 310
Helix 11
11
A
410 418Right-handed alpha
Helix 12
12
A
427 431Right-handed 310
Helix 13
13
A
442 448Right-handed alpha
Helix 14
14
A
449 451Right-handed 310
Helix 15
15
A
480 485Right-handed 310
Helix 16
16
A
500 504Right-handed 310
Helix 17
17
A
539 541Right-handed 310
Helix 18
18
B
211 223Right-handed alpha
Helix 19
19
B
223 233Right-handed alpha
Helix 20
20
B
242 246Right-handed 310
Helix 21
21
B
247 267Right-handed alpha
Helix 22
22
B
271 285Right-handed alpha
Helix 23
23
B
299 323Right-handed alpha
Helix 24
24
B
332 341Right-handed alpha
Helix 25
25
B
352 365Right-handed alpha
Helix 26
26
B
387 392Right-handed alpha
Helix 27
27
B
407 409Right-handed 310
Helix 28
28
B
410 418Right-handed alpha
Helix 29
29
B
427 431Right-handed 310
Helix 30
30
B
442 448Right-handed alpha
Helix 31
31
B
449 451Right-handed 310
Helix 32
32
B
480 485Right-handed 310
Helix 33
33
B
500 504Right-handed 310
Helix 34
34
B
539 541Right-handed 310
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There are 8 sheets in PDB entry 1GS0. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 347first strand
Strand 2
A
373 385anti-parallel
Strand 3
A
543 555anti-parallel
Strand 4
A
458 467anti-parallel
Strand 5
A
399 406anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
437 439first strand
Strand 2
A
534 537anti-parallel
Strand 3
A
490 493anti-parallel
Strand 4
A
471 474parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
497 498first strand
Strand 2
A
518 519anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 507first strand
Strand 2
A
510 512anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 347first strand
Strand 2
B
373 385anti-parallel
Strand 3
B
543 555anti-parallel
Strand 4
B
458 467anti-parallel
Strand 5
B
399 406anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
437 439first strand
Strand 2
B
534 537anti-parallel
Strand 3
B
490 493anti-parallel
Strand 4
B
471 474parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
518 519first strand
Strand 2
B
495 498anti-parallel
Strand 3
B
530 532parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
505 507first strand
Strand 2
B
510 512anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il