Analysis of interatomic Contacts of Structural Units in PDB entry:
1GSE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GSE entry

There are 2 chains in PDB entry 1GSE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2PHE 222
B
 ALA 2PHE 222
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 1GSE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 25Right-handed alpha
Helix 2
2
A
38 46Right-handed alpha
Helix 3
3
A
68 78Right-handed alpha
Helix 4
4
A
86 111Right-handed alpha
Helix 5
5
A
114 130Right-handed alpha
Helix 6
6
A
132 143Right-handed alpha
Helix 7
7
A
155 170Right-handed alpha
Helix 8
8
A
179 190Right-handed alpha
Helix 9
9
A
192 198Right-handed alpha
Helix 10
10
A
210 220Right-handed alpha
Helix 11
11
B
17 25Right-handed alpha
Helix 12
12
B
38 46Right-handed alpha
Helix 13
13
B
68 78Right-handed alpha
Helix 14
14
B
86 111Right-handed alpha
Helix 15
15
B
114 130Right-handed alpha
Helix 16
16
B
132 143Right-handed alpha
Helix 17
17
B
155 170Right-handed alpha
Helix 18
18
B
179 190Right-handed alpha
Helix 19
19
B
192 198Right-handed alpha
Helix 20
20
B
210 220Right-handed alpha
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There are 2 sheets in PDB entry 1GSE. Click on sheet of interest to get list of strands forming it: A, B,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 35first strand
Strand 2
A
5 10parallel
Strand 3
A
57 60anti-parallel
Strand 4
A
63 66anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 35first strand
Strand 2
B
5 10parallel
Strand 3
B
57 60anti-parallel
Strand 4
B
63 66anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il