Analysis of interatomic Contacts of Structural Units in PDB entry:
1GT1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GT1 entry

There are 2 chains in PDB entry 1GT1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 2GLU 159
B
 GLU 3PRO 158
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1GT1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
26 30Right-handed 310
Helix 3
3
A
125 139Right-handed alpha
Helix 4
4
A
142 144Right-handed 310
Helix 5
5
B
9 14Right-handed 310
Helix 6
6
B
26 30Right-handed 310
Helix 7
7
B
125 139Right-handed alpha
Helix 8
8
B
142 144Right-handed 310
Helix 9
9
B
149 155Right-handed alpha
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There are 2 sheets in PDB entry 1GT1. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 24first strand
Strand 2
A
39 46anti-parallel
Strand 3
A
51 60anti-parallel
Strand 4
A
63 73anti-parallel
Strand 5
A
79 82anti-parallel
Strand 6
A
86 94anti-parallel
Strand 7
A
98 106anti-parallel
Strand 8
A
112 121anti-parallel
Strand 9
A
15 24parallel
Strand 10
A
39 46anti-parallel
Strand 11
A
15 24anti-parallel
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There are 11 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
B
15 24anti-parallel
Strand 3
B
112 121anti-parallel
Strand 4
B
98 106anti-parallel
Strand 5
B
86 94anti-parallel
Strand 6
B
79 82anti-parallel
Strand 7
B
63 73anti-parallel
Strand 8
B
51 60anti-parallel
Strand 9
B
39 46anti-parallel
Strand 10
B
15 24parallel
Strand 11
A
146 148anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il