Analysis of interatomic Contacts of Structural Units in PDB entry:
1GTH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1GTH entry

There are 4 chains in PDB entry 1GTH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ALA 1020
B	ALA 2	ALA 1020
C	ALA 2	ALA 1020
D	ALA 2	ALA 1020

There are186 helices in PDB entry 1GTH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	16	Right-handed alpha
Helix 2	2	A	30	42	Right-handed alpha
Helix 3	3	A	68	79	Right-handed alpha
Helix 4	4	A	85	90	Right-handed alpha
Helix 5	5	A	96	106	Right-handed alpha
Helix 6	6	A	108	120	Right-handed alpha
Helix 7	7	A	122	130	Right-handed alpha
Helix 8	8	A	131	135	Right-handed 310
Helix 9	9	A	135	140	Right-handed 310
Helix 10	10	A	140	145	Right-handed 310
Helix 11	11	A	151	167	Right-handed alpha
Helix 12	12	A	178	182	Right-handed 310
Helix 13	13	A	183	188	Right-handed 310
Helix 14	14	A	196	210	Right-handed alpha
Helix 15	15	A	225	230	Right-handed alpha
Helix 16	16	A	237	250	Right-handed alpha
Helix 17	17	A	267	274	Right-handed alpha
Helix 18	18	A	291	295	Right-handed 310
Helix 19	19	A	306	318	Right-handed alpha
Helix 20	20	A	341	354	Right-handed alpha
Helix 21	21	A	366	370	Right-handed 310
Helix 22	22	A	373	383	Right-handed alpha
Helix 23	23	A	444	451	Right-handed alpha
Helix 24	24	A	480	484	Right-handed 310
Helix 25	25	A	488	511	Right-handed alpha
Helix 26	26	A	526	531	Right-handed 310
Helix 27	27	A	551	555	Right-handed 310
Helix 28	28	A	556	567	Right-handed alpha
Helix 29	29	A	578	582	Right-handed 310
Helix 30	30	A	617	632	Right-handed alpha
Helix 31	31	A	646	660	Right-handed alpha
Helix 32	32	A	687	702	Right-handed alpha
Helix 33	33	A	716	727	Right-handed alpha
Helix 34	34	A	767	769	Right-handed 310
Helix 35	35	A	770	785	Right-handed alpha
Helix 36	36	A	798	808	Right-handed alpha
Helix 37	37	A	816	821	Right-handed alpha
Helix 38	38	A	825	841	Right-handed alpha
Helix 39	39	A	842	847	Right-handed 310
Helix 40	40	A	879	901	Right-handed alpha
Helix 41	41	A	920	925	Right-handed alpha
Helix 42	42	A	928	931	Right-handed 310
Helix 43	43	A	934	938	Right-handed 310
Helix 44	44	A	957	967	Right-handed alpha
Helix 45	45	A	990	996	Right-handed alpha
Helix 46	46	B	9	16	Right-handed alpha
Helix 47	47	B	30	42	Right-handed alpha
Helix 48	48	B	68	79	Right-handed alpha
Helix 49	49	B	85	90	Right-handed alpha
Helix 50	50	B	96	106	Right-handed alpha
Helix 51	51	B	108	120	Right-handed alpha
Helix 52	52	B	122	130	Right-handed alpha
Helix 53	53	B	131	135	Right-handed 310
Helix 54	54	B	135	140	Right-handed 310
Helix 55	55	B	140	145	Right-handed 310
Helix 56	56	B	151	167	Right-handed alpha
Helix 57	57	B	178	182	Right-handed 310
Helix 58	58	B	183	188	Right-handed 310
Helix 59	59	B	196	210	Right-handed alpha
Helix 60	60	B	225	230	Right-handed alpha
Helix 61	61	B	237	250	Right-handed alpha
Helix 62	62	B	267	274	Right-handed alpha
Helix 63	63	B	291	295	Right-handed 310
Helix 64	64	B	306	318	Right-handed alpha
Helix 65	65	B	341	354	Right-handed alpha
Helix 66	66	B	366	370	Right-handed 310
Helix 67	67	B	373	383	Right-handed alpha
Helix 68	68	B	444	451	Right-handed alpha
Helix 69	69	B	480	484	Right-handed 310
Helix 70	70	B	488	511	Right-handed alpha
Helix 71	71	B	526	531	Right-handed 310
Helix 72	72	B	551	555	Right-handed 310
Helix 73	73	B	556	567	Right-handed alpha
Helix 74	74	B	578	582	Right-handed 310
Helix 75	75	B	617	632	Right-handed alpha
Helix 76	76	B	646	660	Right-handed alpha
Helix 77	77	B	674	679	Right-handed 310
Helix 78	78	B	681	686	Right-handed alpha
Helix 79	79	B	687	702	Right-handed alpha
Helix 80	80	B	716	728	Right-handed alpha
Helix 81	81	B	767	769	Right-handed 310
Helix 82	82	B	770	785	Right-handed alpha
Helix 83	83	B	798	808	Right-handed alpha
Helix 84	84	B	816	821	Right-handed alpha
Helix 85	85	B	825	841	Right-handed alpha
Helix 86	86	B	842	847	Right-handed 310
Helix 87	87	B	879	900	Right-handed alpha
Helix 88	88	B	920	925	Right-handed alpha
Helix 89	89	B	928	931	Right-handed 310
Helix 90	90	B	934	938	Right-handed 310
Helix 91	91	B	957	967	Right-handed alpha
Helix 92	92	B	990	996	Right-handed alpha
Helix 93	93	C	9	16	Right-handed alpha
Helix 94	94	C	30	42	Right-handed alpha
Helix 95	95	C	68	79	Right-handed alpha
Helix 96	96	C	85	90	Right-handed alpha
Helix 97	97	C	96	106	Right-handed alpha
Helix 98	98	C	108	120	Right-handed alpha
Helix 99	99	C	122	130	Right-handed alpha
Helix 100	100	C	131	135	Right-handed 310
Helix 101	101	C	135	140	Right-handed 310
Helix 102	102	C	140	145	Right-handed 310
Helix 103	103	C	151	167	Right-handed alpha
Helix 104	104	C	178	182	Right-handed 310
Helix 105	105	C	183	188	Right-handed 310
Helix 106	106	C	196	210	Right-handed alpha
Helix 107	107	C	225	230	Right-handed alpha
Helix 108	108	C	237	250	Right-handed alpha
Helix 109	109	C	267	274	Right-handed alpha
Helix 110	110	C	291	295	Right-handed 310
Helix 111	111	C	306	318	Right-handed alpha
Helix 112	112	C	341	354	Right-handed alpha
Helix 113	113	C	366	370	Right-handed 310
Helix 114	114	C	373	383	Right-handed alpha
Helix 115	115	C	444	451	Right-handed alpha
Helix 116	116	C	480	484	Right-handed 310
Helix 117	117	C	488	511	Right-handed alpha
Helix 118	118	C	526	531	Right-handed 310
Helix 119	119	C	551	555	Right-handed 310
Helix 120	120	C	556	567	Right-handed alpha
Helix 121	121	C	578	582	Right-handed 310
Helix 122	122	C	617	632	Right-handed alpha
Helix 123	123	C	646	660	Right-handed alpha
Helix 124	124	C	674	679	Right-handed 310
Helix 125	125	C	681	686	Right-handed alpha
Helix 126	126	C	687	702	Right-handed alpha
Helix 127	127	C	716	728	Right-handed alpha
Helix 128	128	C	767	769	Right-handed 310
Helix 129	129	C	770	785	Right-handed alpha
Helix 130	130	C	798	808	Right-handed alpha
Helix 131	131	C	816	821	Right-handed alpha
Helix 132	132	C	825	841	Right-handed alpha
Helix 133	133	C	842	847	Right-handed 310
Helix 134	134	C	879	901	Right-handed alpha
Helix 135	135	C	920	925	Right-handed alpha
Helix 136	136	C	928	931	Right-handed 310
Helix 137	137	C	934	938	Right-handed 310
Helix 138	138	C	957	967	Right-handed alpha
Helix 139	139	C	990	996	Right-handed alpha
Helix 140	140	D	9	16	Right-handed alpha
Helix 141	141	D	30	42	Right-handed alpha
Helix 142	142	D	68	79	Right-handed alpha
Helix 143	143	D	85	90	Right-handed alpha
Helix 144	144	D	96	106	Right-handed alpha
Helix 145	145	D	108	120	Right-handed alpha
Helix 146	146	D	122	130	Right-handed alpha
Helix 147	147	D	131	135	Right-handed 310
Helix 148	148	D	135	140	Right-handed 310
Helix 149	149	D	140	145	Right-handed 310
Helix 150	150	D	151	167	Right-handed alpha
Helix 151	151	D	178	182	Right-handed 310
Helix 152	152	D	183	188	Right-handed 310
Helix 153	153	D	196	210	Right-handed alpha
Helix 154	154	D	225	230	Right-handed alpha
Helix 155	155	D	237	250	Right-handed alpha
Helix 156	156	D	267	274	Right-handed alpha
Helix 157	157	D	291	295	Right-handed 310
Helix 158	158	D	306	318	Right-handed alpha
Helix 159	159	D	341	354	Right-handed alpha
Helix 160	160	D	366	370	Right-handed 310
Helix 161	161	D	373	383	Right-handed alpha
Helix 162	162	D	444	450	Right-handed alpha
Helix 163	163	D	480	484	Right-handed 310
Helix 164	164	D	488	511	Right-handed alpha
Helix 165	165	D	526	531	Right-handed 310
Helix 166	166	D	551	555	Right-handed 310
Helix 167	167	D	556	567	Right-handed alpha
Helix 168	168	D	578	582	Right-handed 310
Helix 169	169	D	617	632	Right-handed alpha
Helix 170	170	D	646	660	Right-handed alpha
Helix 171	171	D	674	679	Right-handed 310
Helix 172	172	D	681	687	Right-handed alpha
Helix 173	173	D	687	702	Right-handed alpha
Helix 174	174	D	716	728	Right-handed alpha
Helix 175	175	D	767	769	Right-handed 310
Helix 176	176	D	770	785	Right-handed alpha
Helix 177	177	D	798	808	Right-handed alpha
Helix 178	178	D	816	821	Right-handed alpha
Helix 179	179	D	825	841	Right-handed alpha
Helix 180	180	D	842	847	Right-handed 310
Helix 181	181	D	879	901	Right-handed alpha
Helix 182	182	D	920	925	Right-handed alpha
Helix 183	183	D	928	931	Right-handed 310
Helix 184	184	D	934	938	Right-handed 310
Helix 185	185	D	957	967	Right-handed alpha
Helix 186	186	D	990	996	Right-handed alpha

There are 40 sheets in PDB entry 1GTH. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, A, DB, C, DD, DE, DF, G, DH, DI, DJ,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	257	first strand
Strand 2	A	214	218	parallel
Strand 3	A	190	193	parallel
Strand 4	A	278	281	parallel
Strand 5	A	476	478	parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	288	first strand
Strand 2	A	440	441	anti-parallel

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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	305	first strand
Strand 2	A	433	436	parallel
Strand 3	A	334	338	parallel
Strand 4	A	358	362	parallel
Strand 5	A	386	388	parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	391	399	first strand
Strand 2	A	402	413	anti-parallel
Strand 3	A	419	430	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	537	first strand
Strand 2	A	540	542	anti-parallel

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There are 9 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	548	first strand
Strand 2	A	812	815	parallel
Strand 3	A	790	793	parallel
Strand 4	A	731	734	parallel
Strand 5	A	706	710	parallel
Strand 6	A	664	668	parallel
Strand 7	A	636	641	parallel
Strand 8	A	570	572	parallel
Strand 9	A	546	548	parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	590	592	first strand
Strand 2	A	607	609	anti-parallel
Strand 3	A	763	766	anti-parallel
Strand 4	A	738	740	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	859	860	first strand
Strand 2	A	863	864	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	944	948	first strand
Strand 2	A	1002	1006	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	971	973	first strand
Strand 2	A	980	982	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	257	first strand
Strand 2	B	214	218	parallel
Strand 3	B	190	193	parallel
Strand 4	B	278	281	parallel
Strand 5	B	476	478	parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	288	first strand
Strand 2	B	440	441	anti-parallel

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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	305	first strand
Strand 2	B	433	436	parallel
Strand 3	B	334	338	parallel
Strand 4	B	358	362	parallel
Strand 5	B	386	388	parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	398	first strand
Strand 2	B	403	413	anti-parallel
Strand 3	B	419	430	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	537	first strand
Strand 2	B	540	542	anti-parallel

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There are 9 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	546	548	first strand
Strand 2	B	812	815	parallel
Strand 3	B	790	793	parallel
Strand 4	B	731	734	parallel
Strand 5	B	706	710	parallel
Strand 6	B	664	668	parallel
Strand 7	B	636	641	parallel
Strand 8	B	570	572	parallel
Strand 9	B	546	548	parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	590	592	first strand
Strand 2	B	607	609	anti-parallel
Strand 3	B	763	766	anti-parallel
Strand 4	B	738	740	anti-parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	859	860	first strand
Strand 2	B	863	864	anti-parallel

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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	944	948	first strand
Strand 2	B	1002	1006	anti-parallel

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There are 2 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	971	973	first strand
Strand 2	B	980	982	anti-parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	254	257	first strand
Strand 2	C	214	218	parallel
Strand 3	C	190	193	parallel
Strand 4	C	278	281	parallel
Strand 5	C	476	478	parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	288	first strand
Strand 2	C	440	441	anti-parallel

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There are 5 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	305	first strand
Strand 2	C	433	436	parallel
Strand 3	C	334	338	parallel
Strand 4	C	358	362	parallel
Strand 5	C	386	388	parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	391	399	first strand
Strand 2	C	402	413	anti-parallel
Strand 3	C	419	430	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	535	537	first strand
Strand 2	C	540	542	anti-parallel

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There are 9 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	546	548	first strand
Strand 2	C	812	815	parallel
Strand 3	C	790	793	parallel
Strand 4	C	731	734	parallel
Strand 5	C	706	710	parallel
Strand 6	C	664	668	parallel
Strand 7	C	636	641	parallel
Strand 8	C	570	572	parallel
Strand 9	C	546	548	parallel

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There are 4 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	590	592	first strand
Strand 2	C	607	609	anti-parallel
Strand 3	C	763	766	anti-parallel
Strand 4	C	738	740	anti-parallel

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There are 2 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	859	860	first strand
Strand 2	C	863	864	anti-parallel

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There are 2 strands in CI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	944	948	first strand
Strand 2	C	1002	1006	anti-parallel

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There are 2 strands in CJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	971	973	first strand
Strand 2	C	980	982	anti-parallel

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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	254	257	first strand
Strand 2	D	214	218	parallel
Strand 3	D	190	193	parallel
Strand 4	D	278	281	parallel
Strand 5	D	476	478	parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	287	288	first strand
Strand 2	D	440	441	anti-parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	305	first strand
Strand 2	D	433	436	parallel
Strand 3	D	334	338	parallel
Strand 4	D	358	362	parallel
Strand 5	D	386	388	parallel

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There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	391	395	first strand
Strand 2	D	406	413	anti-parallel
Strand 3	D	419	429	anti-parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	535	537	first strand
Strand 2	D	540	542	anti-parallel

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There are 9 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	546	548	first strand
Strand 2	D	812	815	parallel
Strand 3	D	790	793	parallel
Strand 4	D	731	734	parallel
Strand 5	D	706	710	parallel
Strand 6	D	664	668	parallel
Strand 7	D	636	641	parallel
Strand 8	D	570	572	parallel
Strand 9	D	546	548	parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	590	592	first strand
Strand 2	D	607	609	anti-parallel
Strand 3	D	763	766	anti-parallel
Strand 4	D	738	740	anti-parallel

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There are 2 strands in DH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	859	860	first strand
Strand 2	D	863	864	anti-parallel

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There are 2 strands in DI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	944	948	first strand
Strand 2	D	1002	1006	anti-parallel

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There are 2 strands in DJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	971	973	first strand
Strand 2	D	980	982	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1GTH

Analysis of interatomic Contacts of Structural Units in PDB entry:
1GTH