Analysis of interatomic Contacts of Structural Units in PDB entry:
1GTI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GTI entry

There are 12 chains in PDB entry 1GTI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1THR 46
A
 LEU 48GLN 209
B
 PRO 1THR 46
B
 LEU 48GLN 209
C
 PRO 1THR 46
C
 LEU 48GLN 209
D
 PRO 1THR 46
D
 LEU 48GLN 209
E
 PRO 1THR 46
E
 LEU 48GLN 209
F
 PRO 1THR 46
F
 LEU 48GLN 209
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 1GTI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed 310
Helix 2
2
A
35 39Right-handed alpha
Helix 3
3
A
65 75Right-handed alpha
Helix 4
4
A
83 109Right-handed alpha
Helix 5
5
A
111 135Right-handed alpha
Helix 6
6
A
137 139Right-handed 310
Helix 7
7
A
150 165Right-handed alpha
Helix 8
8
A
174 185Right-handed alpha
Helix 9
9
A
187 193Right-handed alpha
Helix 10
10
A
196 199Right-handed alpha
Helix 11
11
B
12 23Right-handed 310
Helix 12
12
B
65 75Right-handed alpha
Helix 13
13
B
83 109Right-handed alpha
Helix 14
14
B
111 135Right-handed alpha
Helix 15
15
B
137 139Right-handed 310
Helix 16
16
B
150 165Right-handed alpha
Helix 17
17
B
174 185Right-handed alpha
Helix 18
18
B
187 193Right-handed alpha
Helix 19
19
B
196 199Right-handed alpha
Helix 20
20
C
12 23Right-handed 310
Helix 21
21
C
35 38Right-handed alpha
Helix 22
22
C
65 75Right-handed alpha
Helix 23
23
C
83 109Right-handed alpha
Helix 24
24
C
111 135Right-handed alpha
Helix 25
25
C
137 139Right-handed 310
Helix 26
26
C
150 165Right-handed alpha
Helix 27
27
C
174 185Right-handed alpha
Helix 28
28
C
187 193Right-handed alpha
Helix 29
29
C
196 199Right-handed alpha
Helix 30
30
D
12 23Right-handed 310
Helix 31
31
D
35 38Right-handed alpha
Helix 32
32
D
65 75Right-handed alpha
Helix 33
33
D
83 109Right-handed alpha
Helix 34
34
D
111 135Right-handed alpha
Helix 35
35
D
137 139Right-handed 310
Helix 36
36
D
150 165Right-handed alpha
Helix 37
37
D
174 185Right-handed alpha
Helix 38
38
D
187 193Right-handed alpha
Helix 39
39
D
196 199Right-handed alpha
Helix 40
40
E
12 23Right-handed 310
Helix 41
41
E
35 39Right-handed alpha
Helix 42
42
E
65 75Right-handed alpha
Helix 43
43
E
83 109Right-handed alpha
Helix 44
44
E
111 135Right-handed alpha
Helix 45
45
E
137 139Right-handed 310
Helix 46
46
E
150 165Right-handed alpha
Helix 47
47
E
174 185Right-handed alpha
Helix 48
48
E
187 193Right-handed alpha
Helix 49
49
E
196 199Right-handed alpha
Helix 50
50
F
12 23Right-handed 310
Helix 51
51
F
35 39Right-handed alpha
Helix 52
52
F
65 75Right-handed alpha
Helix 53
53
F
83 109Right-handed alpha
Helix 54
54
F
111 135Right-handed alpha
Helix 55
55
F
137 139Right-handed 310
Helix 56
56
F
150 165Right-handed alpha
Helix 57
57
F
174 185Right-handed alpha
Helix 58
58
F
187 193Right-handed alpha
Helix 59
59
F
196 199Right-handed alpha
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There are 6 sheets in PDB entry 1GTI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 32first strand
Strand 2
A
3 7parallel
Strand 3
A
54 57anti-parallel
Strand 4
A
60 63anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 32first strand
Strand 2
B
3 7parallel
Strand 3
B
54 57anti-parallel
Strand 4
B
60 63anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 32first strand
Strand 2
C
3 7parallel
Strand 3
C
54 57anti-parallel
Strand 4
C
60 63anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 32first strand
Strand 2
D
3 7parallel
Strand 3
D
54 57anti-parallel
Strand 4
D
60 63anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
28 32first strand
Strand 2
E
3 7parallel
Strand 3
E
54 57anti-parallel
Strand 4
E
60 63anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
28 32first strand
Strand 2
F
3 7parallel
Strand 3
F
54 57anti-parallel
Strand 4
F
60 63anti-parallel
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