Analysis of interatomic Contacts of Structural Units in PDB entry:
1GTJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GTJ entry

There are 4 chains in PDB entry 1GTJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 ALA 1PRO 357
2
 ALA 1PRO 357
3
 ILE 2ALA 3
4
 ILE 2ALA 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1GTJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
7 15Right-handed alpha
Helix 2
2
1
38 50Right-handed alpha
Helix 3
3
1
75 90Right-handed alpha
Helix 4
4
1
103 117Right-handed alpha
Helix 5
5
1
134 136Right-handed 310
Helix 6
6
1
137 155Right-handed alpha
Helix 7
7
1
166 169Right-handed 310
Helix 8
8
1
210 215Right-handed alpha
Helix 9
9
1
228 232Right-handed 310
Helix 10
10
1
276 278Right-handed 310
Helix 11
11
1
279 296Right-handed alpha
Helix 12
12
1
302 307Right-handed alpha
Helix 13
13
1
310 312Right-handed 310
Helix 14
14
1
347 356Right-handed alpha
Helix 15
15
2
7 15Right-handed alpha
Helix 16
16
2
38 49Right-handed alpha
Helix 17
17
2
75 90Right-handed alpha
Helix 18
18
2
103 117Right-handed alpha
Helix 19
19
2
134 136Right-handed 310
Helix 20
20
2
137 155Right-handed alpha
Helix 21
22
2
166 169Right-handed 310
Helix 22
23
2
210 215Right-handed alpha
Helix 23
24
2
228 232Right-handed 310
Helix 24
25
2
276 278Right-handed 310
Helix 25
26
2
279 296Right-handed alpha
Helix 26
27
2
302 307Right-handed alpha
Helix 27
28
2
310 312Right-handed 310
Helix 28
29
2
347 356Right-handed alpha
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There are 12 sheets in PDB entry 1GTJ. Click on sheet of interest to get list of strands forming it: 1A, 1B, 1C, 1D, 1E, 1F, 2A, 2B, 2C, 2D, 2E, 2F,

There are 3 strands in 1A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
4 6first strand
Strand 2
1
261 267parallel
Strand 3
1
270 274anti-parallel
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There are 7 strands in 1B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
56 60first strand
Strand 2
1
94 99parallel
Strand 3
1
27 32parallel
Strand 4
1
124 127parallel
Strand 5
1
157 161parallel
Strand 6
1
188 198parallel
Strand 7
1
253 256parallel
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There are 7 strands in 1C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
56 60first strand
Strand 2
1
94 99parallel
Strand 3
1
27 32parallel
Strand 4
1
124 127parallel
Strand 5
1
157 161parallel
Strand 6
1
188 198parallel
Strand 7
1
201 207anti-parallel
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There are 2 strands in 1D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
131 132first strand
Strand 2
1
179 180anti-parallel
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There are 2 strands in 1E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
220 221first strand
Strand 2
1
249 250anti-parallel
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There are 2 strands in 1F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
314 315first strand
Strand 2
1
345 346anti-parallel
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There are 3 strands in 2A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
4 6first strand
Strand 2
2
261 267parallel
Strand 3
2
270 274anti-parallel
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There are 7 strands in 2B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
56 60first strand
Strand 2
2
94 99parallel
Strand 3
2
27 32parallel
Strand 4
2
124 127parallel
Strand 5
2
157 161parallel
Strand 6
2
188 197parallel
Strand 7
2
253 256parallel
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There are 7 strands in 2C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
56 60first strand
Strand 2
2
94 99parallel
Strand 3
2
27 32parallel
Strand 4
2
124 127parallel
Strand 5
2
157 161parallel
Strand 6
2
188 197parallel
Strand 7
2
202 207anti-parallel
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There are 2 strands in 2D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
131 132first strand
Strand 2
2
179 180anti-parallel
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There are 2 strands in 2E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
220 221first strand
Strand 2
2
249 250anti-parallel
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There are 2 strands in 2F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
314 315first strand
Strand 2
2
345 346anti-parallel
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