Analysis of interatomic Contacts of Structural Units in PDB entry:
1GTL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GTL entry

There are 4 chains in PDB entry 1GTL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 ALA 1PRO 357
2
 ALA 1PRO 357
3
 ILE 2PRO 3
4
 ILE 2PRO 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1GTL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
1
7 15Right-handed alpha
Helix 2
2
1
38 49Right-handed alpha
Helix 3
3
1
75 90Right-handed alpha
Helix 4
4
1
103 116Right-handed alpha
Helix 5
5
1
134 136Right-handed 310
Helix 6
6
1
137 153Right-handed alpha
Helix 7
7
1
210 215Right-handed alpha
Helix 8
8
1
276 278Right-handed 310
Helix 9
9
1
279 296Right-handed alpha
Helix 10
10
1
302 308Right-handed alpha
Helix 11
11
1
310 312Right-handed 310
Helix 12
12
1
347 356Right-handed alpha
Helix 13
13
2
7 15Right-handed alpha
Helix 14
14
2
38 50Right-handed alpha
Helix 15
15
2
74 90Right-handed alpha
Helix 16
16
2
103 116Right-handed alpha
Helix 17
17
2
134 136Right-handed 310
Helix 18
18
2
137 154Right-handed alpha
Helix 19
19
2
166 169Right-handed 310
Helix 20
20
2
210 215Right-handed alpha
Helix 21
21
2
258 262Right-handed 310
Helix 22
22
2
276 278Right-handed 310
Helix 23
23
2
279 296Right-handed alpha
Helix 24
24
2
302 309Right-handed alpha
Helix 25
25
2
310 312Right-handed 310
Helix 26
26
2
347 356Right-handed alpha
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There are 11 sheets in PDB entry 1GTL. Click on sheet of interest to get list of strands forming it: 1A, 1B, 1C, 1D, 1E, 1F, 2A, 2B, 2C, 2D, 2E,

There are 3 strands in 1A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
4 6first strand
Strand 2
1
261 267parallel
Strand 3
1
270 274anti-parallel
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There are 7 strands in 1B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
55 60first strand
Strand 2
1
94 99parallel
Strand 3
1
27 32parallel
Strand 4
1
124 127parallel
Strand 5
1
157 161parallel
Strand 6
1
188 198parallel
Strand 7
1
253 256parallel
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There are 7 strands in 1C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
55 60first strand
Strand 2
1
94 99parallel
Strand 3
1
27 32parallel
Strand 4
1
124 127parallel
Strand 5
1
157 161parallel
Strand 6
1
188 198parallel
Strand 7
1
201 207anti-parallel
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There are 2 strands in 1D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
131 132first strand
Strand 2
1
179 180anti-parallel
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There are 2 strands in 1E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
220 221first strand
Strand 2
1
249 250anti-parallel
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There are 2 strands in 1F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
314 315first strand
Strand 2
1
345 346anti-parallel
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There are 7 strands in 2A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
56 60first strand
Strand 2
2
94 99parallel
Strand 3
2
27 32parallel
Strand 4
2
124 127parallel
Strand 5
2
157 161parallel
Strand 6
2
188 198parallel
Strand 7
2
253 256parallel
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There are 7 strands in 2B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
56 60first strand
Strand 2
2
94 99parallel
Strand 3
2
27 32parallel
Strand 4
2
124 127parallel
Strand 5
2
157 161parallel
Strand 6
2
188 198parallel
Strand 7
2
201 207anti-parallel
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There are 2 strands in 2C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
131 132first strand
Strand 2
2
179 180anti-parallel
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There are 2 strands in 2D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
263 267first strand
Strand 2
2
270 274anti-parallel
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There are 2 strands in 2E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
314 315first strand
Strand 2
2
345 346anti-parallel
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