Analysis of interatomic Contacts of Structural Units in PDB entry:
1GTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GTM entry

There are 3 chains in PDB entry 1GTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3HIS 419
B
 ALA 3HIS 419
C
 ALA 3HIS 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 54 helices in PDB entry 1GTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 19Right-handed alpha
Helix 2
2
A
24 31Right-handed alpha
Helix 3
3
A
79 95Right-handed alpha
Helix 4
4
A
111 113Right-handed 310
Helix 5
5
A
116 133Right-handed alpha
Helix 6
6
A
149 163Right-handed alpha
Helix 7
7
A
169 172Right-handed 310
Helix 8
8
A
178 180Right-handed 310
Helix 9
9
A
189 204Right-handed alpha
Helix 10
10
A
222 233Right-handed alpha
Helix 11
11
A
257 267Right-handed alpha
Helix 12
12
A
281 286Right-handed alpha
Helix 13
13
A
305 308Right-handed 310
Helix 14
14
A
324 332Right-handed alpha
Helix 15
15
A
340 343Right-handed alpha
Helix 16
16
A
346 360Right-handed alpha
Helix 17
17
A
366 390Right-handed alpha
Helix 18
18
A
395 414Right-handed alpha
Helix 19
19
B
4 19Right-handed alpha
Helix 20
20
B
24 30Right-handed alpha
Helix 21
21
B
79 95Right-handed alpha
Helix 22
22
B
111 113Right-handed 310
Helix 23
23
B
116 133Right-handed alpha
Helix 24
24
B
149 163Right-handed alpha
Helix 25
25
B
169 172Right-handed 310
Helix 26
26
B
178 180Right-handed 310
Helix 27
27
B
189 204Right-handed alpha
Helix 28
28
B
222 235Right-handed alpha
Helix 29
29
B
257 267Right-handed alpha
Helix 30
30
B
281 286Right-handed alpha
Helix 31
31
B
303 308Right-handed alpha
Helix 32
32
B
324 332Right-handed alpha
Helix 33
33
B
340 343Right-handed alpha
Helix 34
34
B
346 360Right-handed alpha
Helix 35
35
B
366 391Right-handed alpha
Helix 36
36
B
395 414Right-handed alpha
Helix 37
37
C
4 19Right-handed alpha
Helix 38
38
C
24 31Right-handed alpha
Helix 39
39
C
79 95Right-handed alpha
Helix 40
40
C
111 113Right-handed 310
Helix 41
41
C
116 133Right-handed alpha
Helix 42
42
C
149 163Right-handed alpha
Helix 43
43
C
169 172Right-handed 310
Helix 44
44
C
178 180Right-handed 310
Helix 45
45
C
189 204Right-handed alpha
Helix 46
46
C
222 235Right-handed alpha
Helix 47
47
C
257 267Right-handed alpha
Helix 48
48
C
281 286Right-handed alpha
Helix 49
49
C
303 308Right-handed alpha
Helix 50
50
C
324 332Right-handed alpha
Helix 51
51
C
340 343Right-handed alpha
Helix 52
52
C
346 360Right-handed alpha
Helix 53
53
C
366 390Right-handed alpha
Helix 54
54
C
395 414Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 1GTM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 44first strand
Strand 2
A
50 61anti-parallel
Strand 3
A
100 108anti-parallel
Strand 4
A
66 68parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 73first strand
Strand 2
A
105 107parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 294first strand
Strand 2
A
214 218parallel
Strand 3
A
238 243parallel
Strand 4
A
248 250anti-parallel
Strand 5
A
277 279anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 315first strand
Strand 2
A
336 338parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 44first strand
Strand 2
B
50 61anti-parallel
Strand 3
B
100 108anti-parallel
Strand 4
B
66 68parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 74first strand
Strand 2
B
105 108parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 294first strand
Strand 2
B
214 218parallel
Strand 3
B
238 243parallel
Strand 4
B
248 250anti-parallel
Strand 5
B
277 279anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 315first strand
Strand 2
B
336 338parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 44first strand
Strand 2
C
50 61anti-parallel
Strand 3
C
100 107anti-parallel
Strand 4
C
66 68parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
71 73first strand
Strand 2
C
105 107parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 294first strand
Strand 2
C
214 218parallel
Strand 3
C
238 244parallel
Strand 4
C
247 250anti-parallel
Strand 5
C
277 279anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
313 315first strand
Strand 2
C
336 338parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il