Analysis of interatomic Contacts of Structural Units in PDB entry:
1GTV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GTV entry

There are 2 chains in PDB entry 1GTV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 208
B
 MET 1ALA 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 1GTV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 25Right-handed alpha
Helix 2
2
A
48 51Right-handed alpha
Helix 3
3
A
63 74Right-handed alpha
Helix 4
4
A
80 83Right-handed alpha
Helix 5
5
A
98 107Right-handed alpha
Helix 6
6
A
115 123Right-handed alpha
Helix 7
7
A
143 155Right-handed alpha
Helix 8
8
A
169 183Right-handed alpha
Helix 9
9
A
199 208Right-handed alpha
Helix 10
10
B
13 25Right-handed alpha
Helix 11
11
B
48 51Right-handed alpha
Helix 12
12
B
63 74Right-handed alpha
Helix 13
13
B
80 83Right-handed alpha
Helix 14
14
B
98 107Right-handed alpha
Helix 15
15
B
115 123Right-handed alpha
Helix 16
16
B
143 155Right-handed alpha
Helix 17
17
B
169 183Right-handed alpha
Helix 18
18
B
200 208Right-handed alpha
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There are 4 sheets in PDB entry 1GTV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 12first strand
Strand 2
B
2 12parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 47first strand
Strand 2
B
38 47parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 142first strand
Strand 2
B
134 142parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 168first strand
Strand 2
B
159 168parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il