Analysis of interatomic Contacts of Structural Units in PDB entry:
1GV0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GV0 entry

There are 2 chains in PDB entry 1GV0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 305
B
 MET 1LEU 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1GV0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 23Right-handed alpha
Helix 2
2
A
36 47Right-handed alpha
Helix 3
3
A
48 53Right-handed alpha
Helix 4
4
A
63 68Right-handed 310
Helix 5
5
A
91 106Right-handed alpha
Helix 6
6
A
120 133Right-handed alpha
Helix 7
7
A
135 137Right-handed 310
Helix 8
8
A
143 160Right-handed alpha
Helix 9
9
A
162 164Right-handed 310
Helix 10
10
A
174 176Right-handed 310
Helix 11
11
A
193 195Right-handed 310
Helix 12
12
A
197 210Right-handed alpha
Helix 13
13
A
210 220Right-handed alpha
Helix 14
14
A
225 241Right-handed alpha
Helix 15
15
A
256 258Right-handed 310
Helix 16
16
A
284 305Right-handed alpha
Helix 17
17
B
9 22Right-handed alpha
Helix 18
18
B
36 47Right-handed alpha
Helix 19
19
B
48 53Right-handed alpha
Helix 20
20
B
63 68Right-handed 310
Helix 21
21
B
90 106Right-handed alpha
Helix 22
22
B
120 133Right-handed alpha
Helix 23
23
B
143 160Right-handed alpha
Helix 24
24
B
162 164Right-handed 310
Helix 25
25
B
174 176Right-handed 310
Helix 26
26
B
182 184Right-handed 310
Helix 27
27
B
192 196Right-handed alpha
Helix 28
28
B
197 210Right-handed alpha
Helix 29
29
B
210 220Right-handed alpha
Helix 30
30
B
225 241Right-handed alpha
Helix 31
31
B
256 258Right-handed 310
Helix 32
32
B
284 305Right-handed alpha
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There are 5 sheets in PDB entry 1GV0. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
27 31parallel
Strand 3
A
2 6parallel
Strand 4
A
72 75parallel
Strand 5
A
113 116parallel
Strand 6
A
139 142parallel
Strand 7
A
245 254anti-parallel
Strand 8
A
260 271anti-parallel
Strand 9
A
274 278anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 172first strand
Strand 2
A
178 187anti-parallel
Strand 3
A
190 191anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
27 31parallel
Strand 3
B
2 6parallel
Strand 4
B
72 75parallel
Strand 5
B
113 116parallel
Strand 6
B
139 142parallel
Strand 7
B
245 255anti-parallel
Strand 8
B
259 271anti-parallel
Strand 9
B
274 278anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
186 187anti-parallel
Strand 3
B
190 191anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 172first strand
Strand 2
B
178 180anti-parallel
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