Analysis of interatomic Contacts of Structural Units in PDB entry:
1GV1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GV1 entry

There are 4 chains in PDB entry 1GV1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 305
B
 MET 1ASP 299
C
 MET 1LEU 305
D
 MET 1CYS 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 1GV1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 22Right-handed alpha
Helix 2
2
A
36 47Right-handed alpha
Helix 3
3
A
48 53Right-handed alpha
Helix 4
4
A
63 68Right-handed 310
Helix 5
5
A
86 106Right-handed alpha
Helix 6
6
A
120 133Right-handed alpha
Helix 7
7
A
135 137Right-handed 310
Helix 8
8
A
143 160Right-handed alpha
Helix 9
9
A
162 164Right-handed 310
Helix 10
10
A
174 176Right-handed 310
Helix 11
11
A
182 184Right-handed 310
Helix 12
12
A
193 195Right-handed 310
Helix 13
13
A
197 210Right-handed alpha
Helix 14
14
A
210 220Right-handed alpha
Helix 15
15
A
225 241Right-handed alpha
Helix 16
16
A
256 258Right-handed 310
Helix 17
17
A
284 302Right-handed alpha
Helix 18
18
B
9 22Right-handed alpha
Helix 19
19
B
36 47Right-handed alpha
Helix 20
20
B
48 53Right-handed alpha
Helix 21
21
B
63 68Right-handed 310
Helix 22
22
B
89 107Right-handed alpha
Helix 23
23
B
120 133Right-handed alpha
Helix 24
24
B
135 137Right-handed 310
Helix 25
25
B
143 160Right-handed alpha
Helix 26
26
B
162 164Right-handed 310
Helix 27
27
B
174 176Right-handed 310
Helix 28
28
B
182 184Right-handed 310
Helix 29
29
B
193 195Right-handed 310
Helix 30
30
B
197 210Right-handed alpha
Helix 31
31
B
210 220Right-handed alpha
Helix 32
32
B
225 242Right-handed alpha
Helix 33
33
B
256 258Right-handed 310
Helix 34
34
B
284 298Right-handed alpha
Helix 35
35
C
9 21Right-handed alpha
Helix 36
36
C
36 47Right-handed alpha
Helix 37
37
C
48 53Right-handed alpha
Helix 38
38
C
63 68Right-handed 310
Helix 39
39
C
86 107Right-handed alpha
Helix 40
40
C
120 133Right-handed alpha
Helix 41
41
C
135 137Right-handed 310
Helix 42
42
C
143 160Right-handed alpha
Helix 43
43
C
162 164Right-handed 310
Helix 44
44
C
174 176Right-handed 310
Helix 45
45
C
193 195Right-handed 310
Helix 46
46
C
197 210Right-handed alpha
Helix 47
47
C
210 220Right-handed alpha
Helix 48
48
C
225 241Right-handed alpha
Helix 49
49
C
256 258Right-handed 310
Helix 50
50
C
284 304Right-handed alpha
Helix 51
51
D
9 22Right-handed alpha
Helix 52
52
D
36 47Right-handed alpha
Helix 53
53
D
48 53Right-handed alpha
Helix 54
54
D
63 67Right-handed 310
Helix 55
55
D
90 107Right-handed alpha
Helix 56
56
D
120 133Right-handed alpha
Helix 57
57
D
135 137Right-handed 310
Helix 58
58
D
143 160Right-handed alpha
Helix 59
59
D
162 165Right-handed 310
Helix 60
60
D
174 176Right-handed 310
Helix 61
61
D
182 184Right-handed 310
Helix 62
62
D
193 195Right-handed 310
Helix 63
63
D
197 210Right-handed alpha
Helix 64
64
D
210 220Right-handed alpha
Helix 65
65
D
225 242Right-handed alpha
Helix 66
66
D
256 258Right-handed 310
Helix 67
67
D
284 301Right-handed alpha
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There are 16 sheets in PDB entry 1GV1. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, CC, CD, A, DB, C, DD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
27 31parallel
Strand 3
A
2 6parallel
Strand 4
A
72 75parallel
Strand 5
A
113 116parallel
Strand 6
A
139 141parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
186 187anti-parallel
Strand 3
A
190 191anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 172first strand
Strand 2
A
178 180anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 254first strand
Strand 2
A
260 271anti-parallel
Strand 3
A
274 278anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
27 31parallel
Strand 3
B
2 6parallel
Strand 4
B
72 75parallel
Strand 5
B
113 116parallel
Strand 6
B
139 141parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
186 187anti-parallel
Strand 3
B
190 191anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 172first strand
Strand 2
B
178 180anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 254first strand
Strand 2
B
260 271anti-parallel
Strand 3
B
274 278anti-parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 61first strand
Strand 2
C
27 31parallel
Strand 3
C
2 6parallel
Strand 4
C
72 75parallel
Strand 5
C
113 116parallel
Strand 6
C
139 141parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
166 167first strand
Strand 2
C
186 187anti-parallel
Strand 3
C
190 191anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
170 172first strand
Strand 2
C
178 180anti-parallel
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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
245 254first strand
Strand 2
C
260 271anti-parallel
Strand 3
C
274 278anti-parallel
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There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 61first strand
Strand 2
D
27 31parallel
Strand 3
D
2 6parallel
Strand 4
D
72 75parallel
Strand 5
D
113 116parallel
Strand 6
D
139 141parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
170 172first strand
Strand 2
D
178 180anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
186 187first strand
Strand 2
D
190 191anti-parallel
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There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
245 254first strand
Strand 2
D
260 271anti-parallel
Strand 3
D
274 278anti-parallel
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