Analysis of interatomic Contacts of Structural Units in PDB entry:
1GV4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GV4 entry

There are 2 chains in PDB entry 1GV4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 121HIS 610
B
 THR 121HIS 610
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 1GV4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
139 153Right-handed alpha
Helix 2
2
A
171 176Right-handed 310
Helix 3
3
A
176 180Right-handed 310
Helix 4
4
A
185 190Right-handed alpha
Helix 5
5
A
206 210Right-handed 310
Helix 6
6
A
212 219Right-handed 310
Helix 7
7
A
266 271Right-handed alpha
Helix 8
8
A
273 278Right-handed alpha
Helix 9
9
A
285 297Right-handed alpha
Helix 10
10
A
308 326Right-handed alpha
Helix 11
11
A
344 357Right-handed alpha
Helix 12
12
A
403 407Right-handed 310
Helix 13
13
A
453 469Right-handed alpha
Helix 14
14
A
515 524Right-handed alpha
Helix 15
15
A
527 533Right-handed alpha
Helix 16
16
A
555 559Right-handed 310
Helix 17
17
A
583 594Right-handed alpha
Helix 18
18
A
599 605Right-handed alpha
Helix 19
19
A
606 608Right-handed 310
Helix 20
20
B
139 153Right-handed alpha
Helix 21
21
B
171 176Right-handed 310
Helix 22
22
B
176 180Right-handed 310
Helix 23
23
B
185 190Right-handed alpha
Helix 24
24
B
206 210Right-handed 310
Helix 25
25
B
215 219Right-handed 310
Helix 26
26
B
266 272Right-handed alpha
Helix 27
27
B
273 279Right-handed alpha
Helix 28
28
B
285 297Right-handed alpha
Helix 29
29
B
308 326Right-handed alpha
Helix 30
30
B
344 358Right-handed alpha
Helix 31
31
B
405 410Right-handed alpha
Helix 32
32
B
453 469Right-handed alpha
Helix 33
33
B
515 524Right-handed alpha
Helix 34
34
B
527 533Right-handed alpha
Helix 35
35
B
555 559Right-handed 310
Helix 36
36
B
583 594Right-handed alpha
Helix 37
37
B
599 605Right-handed alpha
Helix 38
38
B
606 608Right-handed 310
Back to top of page

There are 16 sheets in PDB entry 1GV4. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, BH,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 228first strand
Strand 2
A
157 162parallel
Strand 3
A
129 136parallel
Strand 4
A
249 257parallel
Strand 5
A
241 244anti-parallel
Strand 6
A
232 236anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 228first strand
Strand 2
A
157 162parallel
Strand 3
A
129 136parallel
Strand 4
A
249 257parallel
Strand 5
A
432 434parallel
Strand 6
A
427 429anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
199 201anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
399 401anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 282first strand
Strand 2
A
392 395parallel
Strand 3
A
301 305parallel
Strand 4
A
328 332parallel
Strand 5
A
361 363parallel
Back to list of sheets
Back to top of page

There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 374first strand
Strand 2
A
377 382anti-parallel
Strand 3
A
387 390anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 421first strand
Strand 2
A
439 443parallel
Strand 3
A
447 449anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
480 484first strand
Strand 2
A
490 495anti-parallel
Strand 3
A
572 578anti-parallel
Strand 4
A
561 567anti-parallel
Strand 5
A
503 508anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 228first strand
Strand 2
B
157 162parallel
Strand 3
B
129 136parallel
Strand 4
B
249 257parallel
Strand 5
B
241 244anti-parallel
Strand 6
B
232 236anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 228first strand
Strand 2
B
157 162parallel
Strand 3
B
129 136parallel
Strand 4
B
249 257parallel
Strand 5
B
432 434parallel
Strand 6
B
427 429anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 193first strand
Strand 2
B
199 201anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 263first strand
Strand 2
B
399 401anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 282first strand
Strand 2
B
393 395parallel
Strand 3
B
301 305parallel
Strand 4
B
328 332parallel
Strand 5
B
361 363parallel
Back to list of sheets
Back to top of page

There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 374first strand
Strand 2
B
377 382anti-parallel
Strand 3
B
387 390anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 421first strand
Strand 2
B
439 443parallel
Strand 3
B
447 449anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
480 484first strand
Strand 2
B
490 495anti-parallel
Strand 3
B
571 578anti-parallel
Strand 4
B
561 568anti-parallel
Strand 5
B
503 508anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il