Analysis of interatomic Contacts of Structural Units in PDB entry:
1GV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GV8 entry

There is 1 chain in PDB entry 1GV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 94ALA 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1GV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
108 112Right-handed 310
Helix 2
2
A
128 138Right-handed alpha
Helix 3
3
A
145 149Right-handed 310
Helix 4
4
A
150 157Right-handed alpha
Helix 5
5
A
170 175Right-handed 310
Helix 6
6
A
192 203Right-handed alpha
Helix 7
7
A
214 220Right-handed alpha
Helix 8
8
A
221 225Right-handed 310
Helix 9
9
A
240 245Right-handed 310
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There are 2 sheets in PDB entry 1GV8. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
116 119parallel
Strand 3
A
208 212parallel
Strand 4
A
95 102anti-parallel
Strand 5
A
248 250anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
116 119parallel
Strand 3
A
208 212parallel
Strand 4
A
95 102anti-parallel
Strand 5
A
227 230anti-parallel
Strand 6
A
236 238anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il