Analysis of interatomic Contacts of Structural Units in PDB entry:
1GVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GVF entry

There are 2 chains in PDB entry 1GVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2SER 285
B
 SER 2ILE 284
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1GVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 17Right-handed alpha
Helix 2
2
A
27 42Right-handed alpha
Helix 3
3
A
52 57Right-handed alpha
Helix 4
4
A
58 73Right-handed alpha
Helix 5
5
A
86 96Right-handed alpha
Helix 6
6
A
109 127Right-handed alpha
Helix 7
7
A
156 168Right-handed alpha
Helix 8
8
A
190 201Right-handed alpha
Helix 9
9
A
214 224Right-handed alpha
Helix 10
10
A
232 250Right-handed alpha
Helix 11
11
A
255 279Right-handed alpha
Helix 12
12
B
6 17Right-handed alpha
Helix 13
13
B
27 42Right-handed alpha
Helix 14
14
B
50 57Right-handed alpha
Helix 15
15
B
58 74Right-handed alpha
Helix 16
16
B
86 96Right-handed alpha
Helix 17
17
B
109 127Right-handed alpha
Helix 18
18
B
150 154Right-handed 310
Helix 19
19
B
156 168Right-handed alpha
Helix 20
20
B
190 201Right-handed alpha
Helix 21
21
B
214 224Right-handed alpha
Helix 22
22
B
232 250Right-handed alpha
Helix 23
23
B
255 279Right-handed alpha
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There are 2 sheets in PDB entry 1GVF. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 24first strand
Strand 2
A
226 231parallel
Strand 3
A
205 207parallel
Strand 4
A
171 174parallel
Strand 5
A
130 135parallel
Strand 6
A
100 103parallel
Strand 7
A
78 84parallel
Strand 8
A
46 49parallel
Strand 9
A
20 24parallel
Strand 10
A
20 24first strand
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 24first strand
Strand 2
B
226 231parallel
Strand 3
B
205 207parallel
Strand 4
B
171 173parallel
Strand 5
B
130 134parallel
Strand 6
B
100 103parallel
Strand 7
B
78 84parallel
Strand 8
B
46 49parallel
Strand 9
B
20 24parallel
Strand 10
B
20 24first strand
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