Analysis of interatomic Contacts of Structural Units in PDB entry:
1GVH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GVH entry

There is 1 chain in PDB entry 1GVH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1GVH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 19Right-handed alpha
Helix 2
2
A
20 36Right-handed alpha
Helix 3
3
A
37 42Right-handed 310
Helix 4
4
A
51 66Right-handed alpha
Helix 5
5
A
67 73Right-handed 310
Helix 6
6
A
74 88Right-handed alpha
Helix 7
7
A
91 111Right-handed alpha
Helix 8
8
A
113 145Right-handed alpha
Helix 9
9
A
227 236Right-handed alpha
Helix 10
10
A
271 284Right-handed alpha
Helix 11
11
A
304 314Right-handed alpha
Helix 12
12
A
328 335Right-handed alpha
Helix 13
13
A
344 348Right-handed 310
Helix 14
14
A
364 378Right-handed alpha
Helix 15
15
A
381 383Right-handed 310
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There are 2 sheets in PDB entry 1GVH. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 207first strand
Strand 2
A
188 193anti-parallel
Strand 3
A
242 249anti-parallel
Strand 4
A
152 162anti-parallel
Strand 5
A
167 174anti-parallel
Strand 6
A
217 222anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
318 324parallel
Strand 3
A
290 296parallel
Strand 4
A
262 267parallel
Strand 5
A
358 362parallel
Strand 6
A
385 388parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il