Analysis of interatomic Contacts of Structural Units in PDB entry:
1GVI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GVI entry

There are 2 chains in PDB entry 1GVI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 588
B
 MET 1TRP 588
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 1GVI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 13Right-handed 310
Helix 2
2
A
129 134Right-handed 310
Helix 3
3
A
141 145Right-handed 310
Helix 4
4
A
174 181Right-handed alpha
Helix 5
5
A
181 189Right-handed alpha
Helix 6
6
A
221 235Right-handed alpha
Helix 7
7
A
252 262Right-handed alpha
Helix 8
8
A
263 265Right-handed 310
Helix 9
9
A
267 270Right-handed 310
Helix 10
10
A
302 320Right-handed alpha
Helix 11
11
A
329 333Right-handed 310
Helix 12
12
A
334 349Right-handed alpha
Helix 13
13
A
376 388Right-handed alpha
Helix 14
14
A
393 406Right-handed alpha
Helix 15
15
A
409 415Right-handed alpha
Helix 16
16
A
427 432Right-handed alpha
Helix 17
17
A
435 448Right-handed alpha
Helix 18
18
A
458 462Right-handed 310
Helix 19
19
A
469 473Right-handed 310
Helix 20
20
A
483 499Right-handed alpha
Helix 21
21
A
500 506Right-handed alpha
Helix 22
22
B
11 13Right-handed 310
Helix 23
23
B
77 81Right-handed 310
Helix 24
24
B
110 114Right-handed 310
Helix 25
25
B
130 135Right-handed 310
Helix 26
26
B
141 145Right-handed 310
Helix 27
27
B
174 181Right-handed alpha
Helix 28
28
B
181 189Right-handed alpha
Helix 29
29
B
216 220Right-handed 310
Helix 30
30
B
221 235Right-handed alpha
Helix 31
31
B
252 262Right-handed alpha
Helix 32
32
B
265 271Right-handed 310
Helix 33
33
B
302 319Right-handed alpha
Helix 34
34
B
329 333Right-handed 310
Helix 35
35
B
334 349Right-handed alpha
Helix 36
36
B
362 366Right-handed 310
Helix 37
37
B
376 387Right-handed alpha
Helix 38
38
B
393 407Right-handed alpha
Helix 39
39
B
409 414Right-handed alpha
Helix 40
40
B
427 432Right-handed alpha
Helix 41
41
B
435 447Right-handed alpha
Helix 42
42
B
458 462Right-handed 310
Helix 43
43
B
469 473Right-handed 310
Helix 44
44
B
478 482Right-handed 310
Helix 45
45
B
483 500Right-handed alpha
Helix 46
46
B
500 506Right-handed alpha
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There are 15 sheets in PDB entry 1GVI. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
23 25anti-parallel
Strand 3
A
74 75anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
68 72anti-parallel
Strand 3
A
60 64anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
38 42anti-parallel
Strand 3
A
81 90anti-parallel
Strand 4
A
115 119anti-parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
38 42anti-parallel
Strand 3
A
81 90anti-parallel
Strand 4
A
93 98anti-parallel
Strand 5
A
101 103anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
51 52anti-parallel
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There are 7 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
353 356parallel
Strand 3
A
324 327parallel
Strand 4
A
238 243parallel
Strand 5
A
192 194parallel
Strand 6
A
137 139parallel
Strand 7
A
454 456parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 526first strand
Strand 2
A
529 536anti-parallel
Strand 3
A
580 585anti-parallel
Strand 4
A
555 557anti-parallel
Strand 5
A
563 564anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 547first strand
Strand 2
A
570 575anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 19first strand
Strand 2
B
22 30anti-parallel
Strand 3
B
68 75anti-parallel
Strand 4
B
60 64anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
82 89anti-parallel
Strand 4
B
115 117anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 58first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
82 89anti-parallel
Strand 4
B
94 98anti-parallel
Strand 5
B
101 103anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
51 52anti-parallel
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There are 7 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 374first strand
Strand 2
B
353 356parallel
Strand 3
B
324 327parallel
Strand 4
B
238 243parallel
Strand 5
B
192 195parallel
Strand 6
B
137 140parallel
Strand 7
B
454 456parallel
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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
519 526first strand
Strand 2
B
529 536anti-parallel
Strand 3
B
580 584anti-parallel
Strand 4
B
556 557anti-parallel
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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
542 547first strand
Strand 2
B
570 575anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il