Analysis of interatomic Contacts of Structural Units in PDB entry:
1GVL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GVL entry

There is 1 chain in PDB entry 1GVL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 15ALA 244
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1GVL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
20 24Right-handed 310
Helix 2
2
A
55 59Right-handed 310
Helix 3
3
A
164 172Right-handed alpha
Helix 4
4
A
234 244Right-handed alpha
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There are 2 sheets in PDB entry 1GVL. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 35first strand
Strand 2
A
39 48anti-parallel
Strand 3
A
51 54anti-parallel
Strand 4
A
104 108anti-parallel
Strand 5
A
82 90anti-parallel
Strand 6
A
65 67anti-parallel
Strand 7
A
30 35anti-parallel
Strand 8
A
30 35first strand
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
153 163anti-parallel
Strand 3
A
180 184anti-parallel
Strand 4
A
226 230anti-parallel
Strand 5
A
208 216anti-parallel
Strand 6
A
198 201anti-parallel
Strand 7
A
135 142anti-parallel
Strand 8
A
153 163parallel
Strand 9
A
72 73anti-parallel
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