Analysis of interatomic Contacts of Structural Units in PDB entry:
1GVY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GVY entry

There is 1 chain in PDB entry 1GVY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 43ILE 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1GVY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
55 69Right-handed alpha
Helix 2
2
A
95 102Right-handed alpha
Helix 3
3
A
113 115Right-handed 310
Helix 4
4
A
124 134Right-handed alpha
Helix 5
5
A
149 153Right-handed 310
Helix 6
6
A
177 194Right-handed alpha
Helix 7
7
A
226 243Right-handed alpha
Helix 8
8
A
263 269Right-handed alpha
Helix 9
9
A
291 313Right-handed alpha
Helix 10
10
A
324 330Right-handed alpha
Helix 11
11
A
336 348Right-handed alpha
Helix 12
12
A
350 354Right-handed 310
Helix 13
13
A
384 390Right-handed alpha
Helix 14
14
A
391 402Right-handed alpha
Helix 15
15
A
407 411Right-handed 310
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There are 6 sheets in PDB entry 1GVY. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 46first strand
Strand 2
A
419 420parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
279 280parallel
Strand 3
A
250 254parallel
Strand 4
A
205 208parallel
Strand 5
A
137 141parallel
Strand 6
A
107 111parallel
Strand 7
A
73 78parallel
Strand 8
A
356 359parallel
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There are 8 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 316first strand
Strand 2
A
279 280parallel
Strand 3
A
250 254parallel
Strand 4
A
205 208parallel
Strand 5
A
137 141parallel
Strand 6
A
107 111parallel
Strand 7
A
73 78parallel
Strand 8
A
405 406parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 359first strand
Strand 2
A
73 78parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 286first strand
Strand 2
A
320 323parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
367 368first strand
Strand 2
A
374 375anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il