Analysis of interatomic Contacts of Structural Units in PDB entry:
1GW0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1GW0 entry

There are 2 chains in PDB entry 1GW0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	LEU 559
B	GLU 1	LEU 559

There are 25 helices in PDB entry 1GW0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	102	106	Right-handed 310
Helix 2	AA2	A	143	147	Right-handed 310
Helix 3	AA3	A	179	187	Right-handed alpha
Helix 4	AA4	A	354	356	Right-handed 310
Helix 5	AA5	A	387	394	Right-handed alpha
Helix 6	AA6	A	400	403	Right-handed 310
Helix 7	AA7	A	460	465	Right-handed alpha
Helix 8	AA8	A	505	512	Right-handed alpha
Helix 9	AA9	A	520	527	Right-handed alpha
Helix 10	AB1	A	529	547	Right-handed alpha
Helix 11	AB2	A	548	550	Right-handed 310
Helix 12	AB3	B	102	106	Right-handed 310
Helix 13	AB4	B	143	148	Right-handed 310
Helix 14	AB5	B	179	187	Right-handed alpha
Helix 15	AB6	B	293	297	Right-handed 310
Helix 16	AB7	B	354	356	Right-handed 310
Helix 17	AB8	B	387	395	Right-handed alpha
Helix 18	AB9	B	400	403	Right-handed 310
Helix 19	AC1	B	460	465	Right-handed alpha
Helix 20	AC2	B	466	468	Right-handed 310
Helix 21	AC3	B	505	511	Right-handed alpha
Helix 22	AC4	B	520	525	Right-handed alpha
Helix 23	AC5	B	526	528	Right-handed 310
Helix 24	AC6	B	529	547	Right-handed alpha
Helix 25	AC7	B	548	550	Right-handed 310

There are 14 sheets in PDB entry 1GW0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	17	18	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	60	first strand
Strand 2	A	33	47	anti-parallel
Strand 3	A	76	84	parallel
Strand 4	A	121	128	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	72	first strand
Strand 2	A	150	156	parallel
Strand 3	A	133	139	anti-parallel
Strand 4	A	92	95	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	200	first strand
Strand 2	A	165	175	anti-parallel
Strand 3	A	224	231	parallel
Strand 4	A	272	278	anti-parallel
Strand 5	A	247	252	anti-parallel
Strand 6	A	255	262	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	219	first strand
Strand 2	A	307	312	parallel
Strand 3	A	285	291	anti-parallel
Strand 4	A	238	242	anti-parallel
Strand 5	A	265	267	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	375	first strand
Strand 2	A	358	364	anti-parallel
Strand 3	A	414	421	parallel
Strand 4	A	486	492	anti-parallel
Strand 5	A	440	445	anti-parallel
Strand 6	A	475	476	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	408	first strand
Strand 2	A	514	519	parallel
Strand 3	A	497	503	anti-parallel
Strand 4	A	431	435	anti-parallel
Strand 5	A	478	481	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	17	18	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	60	first strand
Strand 2	B	33	47	anti-parallel
Strand 3	B	76	84	parallel
Strand 4	B	121	128	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	72	first strand
Strand 2	B	150	156	parallel
Strand 3	B	133	139	anti-parallel
Strand 4	B	92	95	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	200	first strand
Strand 2	B	165	175	anti-parallel
Strand 3	B	224	231	parallel
Strand 4	B	272	278	anti-parallel
Strand 5	B	247	252	anti-parallel
Strand 6	B	255	262	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	219	first strand
Strand 2	B	307	312	parallel
Strand 3	B	285	291	anti-parallel
Strand 4	B	238	242	anti-parallel
Strand 5	B	265	267	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	375	first strand
Strand 2	B	358	364	anti-parallel
Strand 3	B	414	421	parallel
Strand 4	B	486	492	anti-parallel
Strand 5	B	440	445	anti-parallel
Strand 6	B	475	476	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	408	first strand
Strand 2	B	514	519	parallel
Strand 3	B	497	503	anti-parallel
Strand 4	B	431	435	anti-parallel
Strand 5	B	478	481	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1GW0

Analysis of interatomic Contacts of Structural Units in PDB entry:
1GW0