Analysis of interatomic Contacts of Structural Units in PDB entry:
1GWJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GWJ entry

There is 1 chain in PDB entry 1GWJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4GLY 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1GWJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
42 52Right-handed alpha
Helix 2
2
A
66 70Right-handed 310
Helix 3
3
A
80 97Right-handed alpha
Helix 4
4
A
117 121Right-handed 310
Helix 5
5
A
157 159Right-handed 310
Helix 6
6
A
160 178Right-handed alpha
Helix 7
7
A
191 198Right-handed alpha
Helix 8
8
A
211 216Right-handed alpha
Helix 9
9
A
216 231Right-handed alpha
Helix 10
10
A
252 268Right-handed alpha
Helix 11
11
A
289 298Right-handed alpha
Helix 12
12
A
309 319Right-handed alpha
Helix 13
13
A
328 334Right-handed alpha
Helix 14
14
A
336 344Right-handed alpha
Helix 15
15
A
351 355Right-handed 310
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There are 4 sheets in PDB entry 1GWJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 17first strand
Strand 2
A
20 22anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
324 327parallel
Strand 3
A
301 305parallel
Strand 4
A
271 275parallel
Strand 5
A
235 239parallel
Strand 6
A
182 187parallel
Strand 7
A
101 106parallel
Strand 8
A
57 64parallel
Strand 9
A
26 28parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
154 155parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 139first strand
Strand 2
A
145 149anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il