Analysis of interatomic Contacts of Structural Units in PDB entry:
1GXB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GXB entry

There are 4 chains in PDB entry 1GXB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 344
B
 MET 1SER 343
C
 MET 1GLY 345
D
 MET 1GLY 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 1GXB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 12Right-handed alpha
Helix 2
2
A
17 30Right-handed alpha
Helix 3
3
A
34 49Right-handed alpha
Helix 4
4
A
51 66Right-handed alpha
Helix 5
5
A
89 100Right-handed alpha
Helix 6
6
A
117 126Right-handed alpha
Helix 7
7
A
132 144Right-handed alpha
Helix 8
8
A
150 154Right-handed alpha
Helix 9
9
A
157 168Right-handed alpha
Helix 10
10
A
171 176Right-handed 310
Helix 11
11
A
176 180Right-handed 310
Helix 12
12
A
194 206Right-handed alpha
Helix 13
13
A
249 252Right-handed 310
Helix 14
14
A
257 262Right-handed alpha
Helix 15
15
A
265 279Right-handed alpha
Helix 16
16
A
281 299Right-handed alpha
Helix 17
17
A
304 329Right-handed alpha
Helix 18
18
A
332 341Right-handed alpha
Helix 19
19
B
2 12Right-handed alpha
Helix 20
20
B
17 31Right-handed alpha
Helix 21
21
B
34 49Right-handed alpha
Helix 22
22
B
51 66Right-handed alpha
Helix 23
23
B
89 100Right-handed alpha
Helix 24
24
B
117 126Right-handed alpha
Helix 25
25
B
132 144Right-handed alpha
Helix 26
26
B
150 154Right-handed alpha
Helix 27
27
B
157 168Right-handed alpha
Helix 28
28
B
171 176Right-handed 310
Helix 29
29
B
176 180Right-handed 310
Helix 30
30
B
194 206Right-handed alpha
Helix 31
31
B
249 252Right-handed 310
Helix 32
32
B
257 262Right-handed alpha
Helix 33
33
B
265 279Right-handed alpha
Helix 34
34
B
281 299Right-handed alpha
Helix 35
35
B
304 329Right-handed alpha
Helix 36
36
B
332 341Right-handed alpha
Helix 37
37
C
2 12Right-handed alpha
Helix 38
38
C
17 30Right-handed alpha
Helix 39
39
C
34 49Right-handed alpha
Helix 40
40
C
51 66Right-handed alpha
Helix 41
41
C
89 100Right-handed alpha
Helix 42
42
C
117 126Right-handed alpha
Helix 43
43
C
132 144Right-handed alpha
Helix 44
44
C
150 154Right-handed alpha
Helix 45
45
C
157 168Right-handed alpha
Helix 46
46
C
171 176Right-handed 310
Helix 47
47
C
176 180Right-handed 310
Helix 48
48
C
196 206Right-handed alpha
Helix 49
49
C
249 252Right-handed 310
Helix 50
50
C
257 262Right-handed alpha
Helix 51
51
C
265 279Right-handed alpha
Helix 52
52
C
281 299Right-handed alpha
Helix 53
53
C
304 329Right-handed alpha
Helix 54
54
C
332 343Right-handed alpha
Helix 55
55
D
2 12Right-handed alpha
Helix 56
56
D
17 30Right-handed alpha
Helix 57
57
D
34 49Right-handed alpha
Helix 58
58
D
51 66Right-handed alpha
Helix 59
59
D
89 100Right-handed alpha
Helix 60
60
D
117 126Right-handed alpha
Helix 61
61
D
132 144Right-handed alpha
Helix 62
62
D
150 154Right-handed alpha
Helix 63
63
D
157 168Right-handed alpha
Helix 64
64
D
171 176Right-handed 310
Helix 65
65
D
176 180Right-handed 310
Helix 66
66
D
194 206Right-handed alpha
Helix 67
67
D
249 252Right-handed 310
Helix 68
68
D
257 262Right-handed alpha
Helix 69
69
D
265 279Right-handed alpha
Helix 70
70
D
281 299Right-handed alpha
Helix 71
71
D
304 329Right-handed alpha
Helix 72
72
D
332 343Right-handed alpha
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There are 8 sheets in PDB entry 1GXB. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, CA, CB, A, DB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
187 191parallel
Strand 3
A
212 218parallel
Strand 4
A
230 237anti-parallel
Strand 5
A
240 247anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 108first strand
Strand 2
A
145 149parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 77first strand
Strand 2
B
187 191parallel
Strand 3
B
212 218parallel
Strand 4
B
230 237anti-parallel
Strand 5
B
240 247anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 108first strand
Strand 2
B
145 149parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
75 77first strand
Strand 2
C
187 191parallel
Strand 3
C
212 218parallel
Strand 4
C
230 237anti-parallel
Strand 5
C
240 247anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
104 108first strand
Strand 2
C
145 149parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
75 79first strand
Strand 2
D
187 191parallel
Strand 3
D
212 218parallel
Strand 4
D
230 237anti-parallel
Strand 5
D
240 247anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
104 108first strand
Strand 2
D
145 149parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il