Analysis of interatomic Contacts of Structural Units in PDB entry:
1GXF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GXF entry

There are 2 chains in PDB entry 1GXF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4SER 488
B
 ILE 5SER 488
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 1GXF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 28Right-handed alpha
Helix 2
2
A
50 57Right-handed alpha
Helix 3
3
A
57 77Right-handed alpha
Helix 4
4
A
78 80Right-handed 310
Helix 5
5
A
85 89Right-handed 310
Helix 6
6
A
92 118Right-handed alpha
Helix 7
7
A
172 176Right-handed 310
Helix 8
8
A
178 183Right-handed alpha
Helix 9
9
A
198 211Right-handed alpha
Helix 10
10
A
232 245Right-handed alpha
Helix 11
11
A
292 296Right-handed 310
Helix 12
12
A
296 301Right-handed 310
Helix 13
13
A
326 330Right-handed 310
Helix 14
14
A
334 351Right-handed alpha
Helix 15
15
A
378 386Right-handed alpha
Helix 16
16
A
398 405Right-handed alpha
Helix 17
17
A
433 445Right-handed alpha
Helix 18
18
A
450 456Right-handed alpha
Helix 19
19
A
464 471Right-handed 310
Helix 20
20
B
14 28Right-handed alpha
Helix 21
21
B
50 57Right-handed alpha
Helix 22
22
B
57 77Right-handed alpha
Helix 23
23
B
78 80Right-handed 310
Helix 24
24
B
85 89Right-handed 310
Helix 25
25
B
92 118Right-handed alpha
Helix 26
26
B
172 176Right-handed 310
Helix 27
27
B
178 183Right-handed alpha
Helix 28
28
B
198 211Right-handed alpha
Helix 29
29
B
232 246Right-handed alpha
Helix 30
30
B
292 296Right-handed 310
Helix 31
31
B
296 301Right-handed 310
Helix 32
32
B
326 330Right-handed 310
Helix 33
33
B
334 351Right-handed alpha
Helix 34
34
B
378 386Right-handed alpha
Helix 35
35
B
398 405Right-handed alpha
Helix 36
36
B
433 447Right-handed alpha
Helix 37
37
B
450 456Right-handed alpha
Helix 38
38
B
464 470Right-handed 310
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There are 14 sheets in PDB entry 1GXF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
32 36parallel
Strand 3
A
8 11parallel
Strand 4
A
156 159parallel
Strand 5
A
322 324parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
B
90 91anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
B
82 83anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 132first strand
Strand 2
A
135 139anti-parallel
Strand 3
A
148 153anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
288 290anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 252first strand
Strand 2
A
217 222parallel
Strand 3
A
191 195parallel
Strand 4
A
281 284parallel
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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 261first strand
Strand 2
A
267 271anti-parallel
Strand 3
A
276 279anti-parallel
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There are 7 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
372 376anti-parallel
Strand 3
A
424 430anti-parallel
Strand 4
A
411 418anti-parallel
Strand 5
A
388 396anti-parallel
Strand 6
A
476 479anti-parallel
Strand 7
A
482 484anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 125first strand
Strand 2
B
32 36parallel
Strand 3
B
6 11parallel
Strand 4
B
148 159parallel
Strand 5
B
135 139anti-parallel
Strand 6
B
127 132anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 125first strand
Strand 2
B
32 36parallel
Strand 3
B
6 11parallel
Strand 4
B
148 159parallel
Strand 5
B
322 324parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 165first strand
Strand 2
B
288 290anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 252first strand
Strand 2
B
217 222parallel
Strand 3
B
191 195parallel
Strand 4
B
281 284parallel
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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 261first strand
Strand 2
B
267 271anti-parallel
Strand 3
B
276 279anti-parallel
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There are 7 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 366first strand
Strand 2
B
372 376anti-parallel
Strand 3
B
424 430anti-parallel
Strand 4
B
411 418anti-parallel
Strand 5
B
388 396anti-parallel
Strand 6
B
476 479anti-parallel
Strand 7
B
482 484anti-parallel
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